RESULTS SUMMARY

View contig list

Total sequences analysed = 191925

Sequences sorted into 23868 contigs and 0 singletons

Total SNPs detected = 14298

Total consensus size = 20360530 bp

SNP frequency = 0.07/100 bp

Smallest contig = 2 sequences

Total transitions = 7060

Total transversions = 3836

Total indels = 3402

7200 contigs containing 2 sequences

(0.00)% of these contigs contain snps

4013 contigs containing 3 sequences

(0.00)% of these contigs contain snps

2681 contigs containing 4 sequences

634(23.65)% of these contigs contain snps

with a total of 1509 snps

1901 contigs containing 5 sequences

(0.00)% of these contigs contain snps

1310 contigs containing 6 sequences

124(9.47)% of these contigs contain snps

with a total of 231 snps

1053 contigs containing 7 sequences

215(20.42)% of these contigs contain snps

with a total of 466 snps

789 contigs containing 8 sequences

230(29.15)% of these contigs contain snps

with a total of 648 snps

621 contigs containing 9 sequences

63(10.14)% of these contigs contain snps

with a total of 142 snps

491 contigs containing 10 sequences

85(17.31)% of these contigs contain snps

with a total of 237 snps

416 contigs containing 11 sequences

105(25.24)% of these contigs contain snps

with a total of 307 snps

347 contigs containing 12 sequences

117(33.72)% of these contigs contain snps

with a total of 328 snps

289 contigs containing 13 sequences

50(17.30)% of these contigs contain snps

with a total of 117 snps

258 contigs containing 14 sequences

65(25.19)% of these contigs contain snps

with a total of 137 snps

215 contigs containing 15 sequences

66(30.70)% of these contigs contain snps

with a total of 212 snps

178 contigs containing 16 sequences

58(32.58)% of these contigs contain snps

with a total of 227 snps

153 contigs containing 17 sequences

54(35.29)% of these contigs contain snps

with a total of 199 snps

135 contigs containing 18 sequences

51(37.78)% of these contigs contain snps

with a total of 137 snps

148 contigs containing 19 sequences

64(43.24)% of these contigs contain snps

with a total of 265 snps

103 contigs containing 20 sequences

49(47.57)% of these contigs contain snps

with a total of 172 snps

111 contigs containing 21 sequences

45(40.54)% of these contigs contain snps

with a total of 159 snps

82 contigs containing 22 sequences

30(36.59)% of these contigs contain snps

with a total of 118 snps

83 contigs containing 23 sequences

41(49.40)% of these contigs contain snps

with a total of 142 snps

63 contigs containing 24 sequences

27(42.86)% of these contigs contain snps

with a total of 72 snps

62 contigs containing 25 sequences

33(53.23)% of these contigs contain snps

with a total of 98 snps

70 contigs containing 26 sequences

33(47.14)% of these contigs contain snps

with a total of 99 snps

53 contigs containing 27 sequences

23(43.40)% of these contigs contain snps

with a total of 88 snps

64 contigs containing 28 sequences

26(40.62)% of these contigs contain snps

with a total of 108 snps

61 contigs containing 29 sequences

32(52.46)% of these contigs contain snps

with a total of 129 snps

47 contigs containing 30 sequences

27(57.45)% of these contigs contain snps

with a total of 120 snps

40 contigs containing 31 sequences

19(47.50)% of these contigs contain snps

with a total of 66 snps

36 contigs containing 32 sequences

21(58.33)% of these contigs contain snps

with a total of 68 snps

33 contigs containing 33 sequences

18(54.55)% of these contigs contain snps

with a total of 60 snps

28 contigs containing 34 sequences

15(53.57)% of these contigs contain snps

with a total of 91 snps

29 contigs containing 35 sequences

19(65.52)% of these contigs contain snps

with a total of 50 snps

29 contigs containing 36 sequences

22(75.86)% of these contigs contain snps

with a total of 132 snps

26 contigs containing 37 sequences

16(61.54)% of these contigs contain snps

with a total of 107 snps

30 contigs containing 38 sequences

24(80.00)% of these contigs contain snps

with a total of 119 snps

33 contigs containing 39 sequences

26(78.79)% of these contigs contain snps

with a total of 127 snps

23 contigs containing 40 sequences

17(73.91)% of these contigs contain snps

with a total of 136 snps

20 contigs containing 41 sequences

15(75.00)% of these contigs contain snps

with a total of 94 snps

18 contigs containing 42 sequences

14(77.78)% of these contigs contain snps

with a total of 63 snps

20 contigs containing 43 sequences

15(75.00)% of these contigs contain snps

with a total of 118 snps

22 contigs containing 44 sequences

19(86.36)% of these contigs contain snps

with a total of 91 snps

20 contigs containing 45 sequences

14(70.00)% of these contigs contain snps

with a total of 54 snps

13 contigs containing 46 sequences

12(92.31)% of these contigs contain snps

with a total of 87 snps

15 contigs containing 47 sequences

10(66.67)% of these contigs contain snps

with a total of 54 snps

11 contigs containing 48 sequences

10(90.91)% of these contigs contain snps

with a total of 39 snps

16 contigs containing 49 sequences

14(87.50)% of these contigs contain snps

with a total of 89 snps

14 contigs containing 50 sequences

12(85.71)% of these contigs contain snps

with a total of 90 snps

8 contigs containing 51 sequences

7(87.50)% of these contigs contain snps

with a total of 53 snps

12 contigs containing 52 sequences

9(75.00)% of these contigs contain snps

with a total of 52 snps

14 contigs containing 53 sequences

14(100.00)% of these contigs contain snps

with a total of 135 snps

15 contigs containing 54 sequences

15(100.00)% of these contigs contain snps

with a total of 214 snps

14 contigs containing 55 sequences

14(100.00)% of these contigs contain snps

with a total of 118 snps

6 contigs containing 56 sequences

6(100.00)% of these contigs contain snps

with a total of 42 snps

16 contigs containing 57 sequences

15(93.75)% of these contigs contain snps

with a total of 116 snps

16 contigs containing 58 sequences

13(81.25)% of these contigs contain snps

with a total of 90 snps

9 contigs containing 59 sequences

8(88.89)% of these contigs contain snps

with a total of 53 snps

6 contigs containing 60 sequences

5(83.33)% of these contigs contain snps

with a total of 49 snps

8 contigs containing 61 sequences

6(75.00)% of these contigs contain snps

with a total of 35 snps

6 contigs containing 62 sequences

6(100.00)% of these contigs contain snps

with a total of 42 snps

6 contigs containing 63 sequences

6(100.00)% of these contigs contain snps

with a total of 35 snps

2 contigs containing 64 sequences

1(50.00)% of these contigs contain snps

with a total of 6 snps

8 contigs containing 65 sequences

7(87.50)% of these contigs contain snps

with a total of 59 snps

7 contigs containing 66 sequences

4(57.14)% of these contigs contain snps

with a total of 21 snps

10 contigs containing 67 sequences

8(80.00)% of these contigs contain snps

with a total of 62 snps

10 contigs containing 68 sequences

8(80.00)% of these contigs contain snps

with a total of 92 snps

1 contigs containing 69 sequences

1(100.00)% of these contigs contain snps

with a total of 29 snps

7 contigs containing 70 sequences

7(100.00)% of these contigs contain snps

with a total of 49 snps

2 contigs containing 71 sequences

2(100.00)% of these contigs contain snps

with a total of 11 snps

4 contigs containing 72 sequences

3(75.00)% of these contigs contain snps

with a total of 27 snps

4 contigs containing 73 sequences

4(100.00)% of these contigs contain snps

with a total of 50 snps

8 contigs containing 74 sequences

7(87.50)% of these contigs contain snps

with a total of 53 snps

1 contigs containing 75 sequences

1(100.00)% of these contigs contain snps

with a total of 5 snps

9 contigs containing 76 sequences

8(88.89)% of these contigs contain snps

with a total of 83 snps

2 contigs containing 78 sequences

1(50.00)% of these contigs contain snps

with a total of 8 snps

6 contigs containing 79 sequences

6(100.00)% of these contigs contain snps

with a total of 53 snps

3 contigs containing 80 sequences

3(100.00)% of these contigs contain snps

with a total of 21 snps

5 contigs containing 81 sequences

5(100.00)% of these contigs contain snps

with a total of 54 snps

3 contigs containing 82 sequences

3(100.00)% of these contigs contain snps

with a total of 24 snps

2 contigs containing 83 sequences

2(100.00)% of these contigs contain snps

with a total of 20 snps

1 contigs containing 84 sequences

(0.00)% of these contigs contain snps

7 contigs containing 85 sequences

7(100.00)% of these contigs contain snps

with a total of 44 snps

1 contigs containing 86 sequences

1(100.00)% of these contigs contain snps

with a total of 4 snps

4 contigs containing 87 sequences

3(75.00)% of these contigs contain snps

with a total of 22 snps

3 contigs containing 88 sequences

3(100.00)% of these contigs contain snps

with a total of 22 snps

1 contigs containing 89 sequences

1(100.00)% of these contigs contain snps

with a total of 17 snps

3 contigs containing 90 sequences

3(100.00)% of these contigs contain snps

with a total of 74 snps

1 contigs containing 91 sequences

1(100.00)% of these contigs contain snps

with a total of 9 snps

1 contigs containing 92 sequences

1(100.00)% of these contigs contain snps

with a total of 3 snps

1 contigs containing 93 sequences

1(100.00)% of these contigs contain snps

with a total of 21 snps

2 contigs containing 94 sequences

1(50.00)% of these contigs contain snps

with a total of 1 snps

1 contigs containing 95 sequences

1(100.00)% of these contigs contain snps

with a total of 3 snps

5 contigs containing 96 sequences

5(100.00)% of these contigs contain snps

with a total of 102 snps

3 contigs containing 97 sequences

3(100.00)% of these contigs contain snps

with a total of 42 snps

4 contigs containing 98 sequences

4(100.00)% of these contigs contain snps

with a total of 70 snps

2 contigs containing 99 sequences

2(100.00)% of these contigs contain snps

with a total of 24 snps

3 contigs containing 100 sequences

2(66.67)% of these contigs contain snps

with a total of 17 snps

1 contigs containing 101 sequences

1(100.00)% of these contigs contain snps

with a total of 6 snps

4 contigs containing 103 sequences

4(100.00)% of these contigs contain snps

with a total of 79 snps

1 contigs containing 105 sequences

1(100.00)% of these contigs contain snps

with a total of 32 snps

1 contigs containing 107 sequences

1(100.00)% of these contigs contain snps

with a total of 2 snps

2 contigs containing 108 sequences

1(50.00)% of these contigs contain snps

with a total of 15 snps

2 contigs containing 110 sequences

2(100.00)% of these contigs contain snps

with a total of 15 snps

2 contigs containing 111 sequences

2(100.00)% of these contigs contain snps

with a total of 36 snps

2 contigs containing 112 sequences

2(100.00)% of these contigs contain snps

with a total of 18 snps

1 contigs containing 113 sequences

1(100.00)% of these contigs contain snps

with a total of 9 snps

1 contigs containing 115 sequences

1(100.00)% of these contigs contain snps

with a total of 33 snps

1 contigs containing 116 sequences

1(100.00)% of these contigs contain snps

with a total of 27 snps

2 contigs containing 117 sequences

2(100.00)% of these contigs contain snps

with a total of 35 snps

2 contigs containing 118 sequences

2(100.00)% of these contigs contain snps

with a total of 7 snps

1 contigs containing 120 sequences

1(100.00)% of these contigs contain snps

with a total of 1 snps

1 contigs containing 121 sequences

(0.00)% of these contigs contain snps

1 contigs containing 123 sequences

1(100.00)% of these contigs contain snps

with a total of 14 snps

1 contigs containing 124 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

1 contigs containing 128 sequences

1(100.00)% of these contigs contain snps

with a total of 33 snps

2 contigs containing 129 sequences

2(100.00)% of these contigs contain snps

with a total of 42 snps

3 contigs containing 130 sequences

2(66.67)% of these contigs contain snps

with a total of 27 snps

1 contigs containing 132 sequences

1(100.00)% of these contigs contain snps

with a total of 1 snps

2 contigs containing 133 sequences

2(100.00)% of these contigs contain snps

with a total of 35 snps

1 contigs containing 134 sequences

(0.00)% of these contigs contain snps

1 contigs containing 135 sequences

1(100.00)% of these contigs contain snps

with a total of 20 snps

2 contigs containing 136 sequences

2(100.00)% of these contigs contain snps

with a total of 51 snps

1 contigs containing 137 sequences

1(100.00)% of these contigs contain snps

with a total of 10 snps

2 contigs containing 138 sequences

2(100.00)% of these contigs contain snps

with a total of 17 snps

1 contigs containing 141 sequences

1(100.00)% of these contigs contain snps

with a total of 24 snps