Data Overview

 
 Genes : 2926451 genes and 3297557 mRNAs
SourceNumber of genesNumber of mRNA
Cerasus x yedoensis Somei-Yoshino Genome v1.0 Assembly & Annotation095076
Fragaria daltoniana YNU Genome v1.0 Assembly & Annotation2813128131
Fragaria iinumae Genome v1.0 Assembly & Annotation2354023665
Fragaria mandshurica YNU Genome v1.0 Assembly & Annotation2541125411
Fragaria nilgerrensis Genome v1.0 Assembly & Annotation2878057560
Fragaria nilgerrensis SCBG Genome v1.0 Assembly & Annotation2906829068
Fragaria nilgerrensis YNU Genome v1.0 Assembly & Annotation2449124491
Fragaria nubicola SCBG Genome v1.0 Assembly & Annotation2759427595
Fragaria pentaphylla YNU Genome v1.0 Assembly & Annotation2385323853
Fragaria vesca (CFRA 2339) Whole Genome v1.0 Assembly & Annotation3034933474
Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation6807368073
Fragaria vesca Whole Genome v1.1.a2 (Re-annotation of v1.1)064597
Fragaria vesca Whole Genome v4.0.a1 Assembly & Annotation2860828655
Fragaria vesca Whole Genome v4.0.a2 (Re-annotation of v4.0.a1)3400864597
Fragaria viridis SCBG Genome v1.0 Assembly & Annotation2619926199
Fragaria viridis YNU Genome v1.0 Assembly & Annotation2477924779
Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1216174108087
Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)108447255492
GDR Gene Database499850
Gillenia trifoliata Whole Genome v1.0 Assembly & Annotation2884730259
Malus baccata Genome v1.0 Assembly & Annotation045901
Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & Annotation9014790147
Malus sieversii Haploid Consensus Whole Genome v1.0 Assembly & Annotation4521045210
Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & Annotation9019390193
Malus sylvestris Haploid Consensus Whole Genome v1.0 Assembly & Annotation4519945199
Malus x domestica cv. Gala Diploid Consensus Whole Genome v1.0 Assembly & Annotation9050790507
Malus x domestica cv. Gala Haploid Consensus Whole Genome v1.0 Assembly & Annotation4535245352
Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation5274145116
Malus x domestica HFTH1 Whole Genome v1.04467744677
Malus x domestica Whole Genome v1.0 Assembly & Annotation063561
Malus x domestica Whole Genome v1.0p Assembly & Annotation3029430294
NCBI Rosaceae gene and mRNA sequences5159256592
Potentilla micrantha Draft Genome v1.0 Assembly & Annotation3358533602
Prunus armeniaca cv.Stella Whole Genome v1.0 Assembly & Annotation3823740960
Prunus armeniaca Genome v1.0 Assembly & Annotation3043652096
Prunus armeniaca Longwangmao Whole Genome v1.0 Assembly & Annotation6597453542
Prunus armeniaca Marouch n14 Whole Genome v1.0 Assembly & Annotation3752140067
Prunus armeniaca Sungold Whole Genome v1.0 Assembly & Annotation3266952172
Prunus avium Tieton Genome v1.0 Assembly & Annotation3043930975
Prunus avium Tieton Genome v2.0 Assembly & Annotation3998442045
Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)436730
Prunus davidiana Whole Genome v1.0 Assembly & Annotation2240326527
Prunus davidiana Whole Genome v2.0 Assembly & Annotation2723627236
Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1130866138597
Prunus dulcis Lauranne Genome v1.0232640
Prunus dulcis Texas Genome v2.02704233119
Prunus ferganensis Whole Genome v1.0 Assembly & Annotation2259227431
Prunus ferganensis Whole Genome v2.0 Assembly & Annotation2858728587
Prunus kansuensis Whole Genome v1.0 Assembly & Annotation2232926297
Prunus mandshurica CH264_4 Whole Genome v1.0 Assembly & Annotation3902141386
Prunus mira Whole Genome v1.0 Assembly & Annotation2228026958
Prunus persica Chinese Cling Whole Genome v1.0 Assembly & Annotation2633526335
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2687347089
Prunus persica Whole Genome v1.0 Assembly & Annotation2786428702
Prunus salicina Sanyueli FAAS Whole Genome v1.0 Assembly & Annotation2971429714
Prunus salicina Sanyueli Whole Genome v2.0 Assembly & Annotation2444824448
Prunus salicina Zhongli No. 6 Whole Genome v1.0 Assembly & Annotation027481
Prunus sibirica CH320_5 Whole Genome v1.0 Assembly & Annotation4374146196
Prunus sibirica F106 Whole Genome v1.0 Assembly & Annotation3295953021
Prunus yedoensis var. nudiflora Genome v1.0 Assembly & Annotation4129441294
Pyrus betulifolia Genome v1.0 Assembly & Annotation5955259552
Pyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.14218046174
Pyrus communis Bartlett DH Genome v2.03744537445
Pyrus communis Genome v1.0 Draft Assembly & Annotation4521745217
Pyrus pyrifolia Cuiguan Whole Genome v1.0 Assembly & Annotation4262242622
Pyrus pyrifolia Whole Genome v1.0 Assembly & Annotation448760
Pyrus ussuriensis x communis Zhongai 1 v1.0 Whole Genome Assembly & Annotation4312043120
Rosa chinensis Old Blush homozygous genome v2.05038745469
Rosa chinensis Whole Genome v1.0 Assembly & Annotation4448139669
Rosa rugosa Whole Genome v1.0 Assembly & Annotation3970439704
Rubus chingii Hu Whole Genome v1.0 Assembly & Annotation3199431994
Rubus occidentalis Whole Genome Assembly v1.0 & Annotation v12800528005
Rubus occidentalis Whole Genome Assembly v1.1027612
Rubus occidentalis Whole Genome v3.0 Assembly & Annotation3325333286
 
 Genomes : 81 genome assemblies
Source
Cerasus x yedoensis Somei-Yoshino Genome v1.0 Assembly & Annotation
Fragaria daltoniana YNU Genome v1.0 Assembly & Annotation
Fragaria iinumae Genome v1.0 Assembly & Annotation
Fragaria mandshurica YNU Genome v1.0 Assembly & Annotation
Fragaria nilgerrensis Genome v1.0 Assembly & Annotation
Fragaria nilgerrensis SCBG Genome v1.0 Assembly & Annotation
Fragaria nilgerrensis YNU Genome v1.0 Assembly & Annotation
Fragaria nubicola SCBG Genome v1.0 Assembly & Annotation
Fragaria pentaphylla YNU Genome v1.0 Assembly & Annotation
Fragaria vesca (CFRA 2339) Whole Genome v1.0 Assembly & Annotation
Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation
Fragaria vesca Whole Genome v1.1.a2 (Re-annotation of v1.1)
Fragaria vesca Whole Genome v1.1 Assembly & Annotation
Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fragaria vesca Whole Genome v4.0.a1 Assembly & Annotation
Fragaria vesca Whole Genome v4.0.a2 (Re-annotation of v4.0.a1)
Fragaria vesca Whole Genome v4.0.a2 (Re-annotation of v4.0.a1, Synteny)
Fragaria viridis SCBG Genome v1.0 Assembly & Annotation
Fragaria viridis YNU Genome v1.0 Assembly & Annotation
Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)
Gillenia trifoliata Whole Genome v1.0 Assembly & Annotation
Malus baccata Genome v1.0 Assembly & Annotation
Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus sieversii Haploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus sylvestris Haploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus x domestica cv. Gala Diploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus x domestica cv. Gala Haploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Malus x domestica HFTH1 Whole Genome v1.0
Malus x domestica Whole Genome v1.0 Assembly & Annotation
Malus x domestica Whole Genome v1.0p Assembly & Annotation
Malus x domestica Whole Genome v3.0.a1 Assembly & Annotation
Potentilla micrantha Draft Genome v1.0 Assembly & Annotation
Prunus armeniaca cv.Stella Whole Genome v1.0 Assembly & Annotation
Prunus armeniaca Genome v1.0 Assembly & Annotation
Prunus armeniaca Longwangmao Whole Genome v1.0 Assembly & Annotation
Prunus armeniaca Marouch n14 Whole Genome v1.0 Assembly & Annotation
Prunus armeniaca Sungold Whole Genome v1.0 Assembly & Annotation
Prunus avium Tieton Genome v1.0 Assembly & Annotation
Prunus avium Tieton Genome v2.0 Assembly & Annotation
Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)
Prunus davidiana Whole Genome v1.0 Assembly & Annotation
Prunus davidiana Whole Genome v2.0 Assembly & Annotation
Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1
Prunus dulcis Lauranne Genome v1.0
Prunus dulcis Texas Genome v2.0
Prunus ferganensis Whole Genome v1.0 Assembly & Annotation
Prunus ferganensis Whole Genome v2.0 Assembly & Annotation
Prunus kansuensis Whole Genome v1.0 Assembly & Annotation
Prunus kansuensis Whole Genome v2.0 Assembly & Annotation
Prunus mandshurica CH264_4 Whole Genome v1.0 Assembly & Annotation
Prunus mira Whole Genome v1.0 Assembly & Annotation
Prunus mira Whole Genome v2.0 Assembly & Annotation
Prunus persica Chinese Cling Whole Genome v1.0 Assembly & Annotation
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Prunus persica Whole Genome v1.0 Assembly & Annotation
Prunus salicina Sanyueli FAAS Whole Genome v1.0 Assembly & Annotation
Prunus salicina Sanyueli Whole Genome v2.0 Assembly & Annotation
Prunus salicina Zhongli No. 6 Whole Genome v1.0 Assembly & Annotation
Prunus sibirica CH320_5 Whole Genome v1.0 Assembly & Annotation
Prunus sibirica F106 Whole Genome v1.0 Assembly & Annotation
Prunus yedoensis var. nudiflora Genome v1.0 Assembly & Annotation
Pyrus betulifolia Genome v1.0 Assembly & Annotation
Pyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.1
Pyrus communis Bartlett DH Genome v2.0
Pyrus communis Genome v1.0 Draft Assembly & Annotation
Pyrus pyrifolia Cuiguan Whole Genome v1.0 Assembly & Annotation
Pyrus pyrifolia Whole Genome v1.0 Assembly & Annotation
Pyrus ussuriensis x communis Zhongai 1 v1.0 Whole Genome Assembly & Annotation
Rosa chinensis Old Blush homozygous genome v2.0
Rosa chinensis Old Blush Illumina genome v1.0
Rosa chinensis Whole Genome v1.0 Assembly & Annotation
Rosa multiflora Draft Genome v1.0 Assembly & Annotation
Rosa rugosa Whole Genome v1.0 Assembly & Annotation
Rubus chingii Hu Whole Genome v1.0 Assembly & Annotation
Rubus occidentalis Whole Genome Assembly v1.0 & Annotation v1
Rubus occidentalis Whole Genome Assembly v1.1
Rubus occidentalis Whole Genome v3.0 Assembly & Annotation
Rubus ulmifolius Burbank Thornless Whole Genome v1.0 Assembly
 
 Germplasm : 20685 germplasm
 
 Fragaria : 2914
Germplasm TypeNumber of germplasm
breeding_research_material1891
cultivar535
wild_unimproved468
population20
 
 Malus : 5811
Germplasm TypeNumber of germplasm
cultivar2593
breeding_research_material2184
wild_unimproved939
population95
 
 Prunus : 7868
Germplasm TypeNumber of germplasm
breeding_research_material4141
cultivar3394
wild_unimproved215
population118
 
 Pyrus : 3899
Germplasm TypeNumber of germplasm
cultivar2308
wild_unimproved974
breeding_research_material610
population7
 
 Rosa : 193
Germplasm TypeNumber of germplasm
cultivar172
population11
breeding_research_material8
wild_unimproved2
 
 Rubus : 1062
Germplasm TypeNumber of germplasm
cultivar415
wild_unimproved331
breeding_research_material308
population8
 
 Maps : 372 maps
GenusNumber of maps
Fragaria31
Malus122
Prunus186
Pyrus25
Rosa23
Rubus13
 
 Markers : 4242613 markers
 
 Fragaria : 637319
Marker TypeNumber of markers
SNP619457
Indel12044
EST-SSR4423
SSR994
DArT131
AFLP110
dCAPS51
EST marker27
SSCP26
genetic marker25
gene marker16
STS9
SCAR5
RFLP1
 
 Malus : 2653760
Marker TypeNumber of markers
SNP2645945
HaploBlock marker3433
SSR1586
AFLP977
DArT677
RAPD359
genetic marker185
EST marker167
EST-SSR159
RFLP129
gene marker31
Isozyme29
SCAR22
PCR marker18
candidate gene marker14
RGA10
SNP/Indel7
CAPS7
SNP_TSP3
Heritable Phenotypic Marker1
STS1
 
 Prunus : 483180
Marker TypeNumber of markers
Indel156379
CAPS131687
SSR94608
SNP88042
SLAF8862
AFLP1267
EST marker680
RFLP502
gene marker301
candidate gene marker261
RAPD143
EST-SSR133
genetic marker62
Isozyme43
RAF39
ISSR37
SRAP32
SCAR24
LTR22
dCAPS19
IMA16
STS9
overgo probe5
PCR marker3
Heritable Phenotypic Marker2
SSLP1
SNP/Indel1
 
 Pyrus : 393635
Marker TypeNumber of markers
SNP290098
SSR102835
AFLP683
IRAP8
STS5
Isozyme3
gene marker2
ISSR1
 
 Rosa : 74719
Marker TypeNumber of markers
SNP71106
AFLP2200
SSR620
CAPS234
NBS148
RAPD130
genetic marker106
RFLP52
gene marker49
RGA41
SSCP17
EST marker12
Heritable Phenotypic Marker2
SCAR2
 
 Rubus : 8741
Marker TypeNumber of markers
SNP7320
SSR577
AFLP529
candidate gene marker165
HRM115
gene marker18
EST-SSR16
genetic marker1
 
 Phenotypes : 416122 phenotypic measurements
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Fragaria bucharica512
Fragaria cascadensis27130
Fragaria chiloensis481477
Fragaria chinensis613
Fragaria corymbosa414
Fragaria daltoniana33
Fragaria gracilis22
Fragaria hybrid1241
Fragaria iinumae1227
Fragaria iturupensis314
Fragaria mandshurica22
Fragaria moschata45264
Fragaria moupinensis22
Fragaria nilgerrensis416
Fragaria nipponica514
Fragaria nubicola11
Fragaria orientalis722
Fragaria pentaphylla412
Fragaria sp.99198
Fragaria spp.1316
Fragaria tibetica33
Fragaria vesca1411026
Fragaria virginiana45742
Fragaria viridis1326
Fragaria x ananassa115129909
Fragaria x bifera710
Fragaria x bringhurstii22185
Fragaria x vescana1315
Malus floribunda1616
Malus hybrid1632
Malus sieversii1616
Malus x domestica238165008
Prunus americana1531
Prunus angustifolia414
Prunus argentea2740
Prunus armeniaca331664
Prunus avium4417431
Prunus bokhariensis1722
Prunus bucharica816
Prunus canescens11
Prunus cerasifera23327
Prunus cerasus3416313
Prunus consociiflora12
Prunus davidiana18135
Prunus domestica28662
Prunus dulcis472783
Prunus fasciculata45
Prunus ferganensis1941
Prunus ferganica1721
Prunus hortulana22
Prunus hybrid91555
Prunus japonica58
Prunus kansuensis79
Prunus kuramica714
Prunus maackii11
Prunus mexicana48
Prunus mira39128
Prunus mume1111
Prunus nigra33
Prunus pedunculata893
Prunus persica6827390
Prunus petunnikowii736
Prunus rivularis89
Prunus salicina25236
Prunus simonii1618
Prunus spinosa8107
Prunus spp.75650
Prunus subcordata528
Prunus tangutica892
Prunus tenella728
Prunus texana33
Prunus triloba714
Prunus undulata11
Prunus webbii2787
Prunus x blireiana610
Prunus x dasycarpa917
Pyrus betulifolia441144
Pyrus calleryana461832
Pyrus communis4923902
Pyrus cordata43289
Pyrus cossonii42141
Pyrus dimorphophylla41483
Pyrus elaeagrifolia48345
Pyrus fauriei45724
Pyrus gharbiana40117
Pyrus glabra1434
Pyrus hondoensis46616
Pyrus hybrid503533
Pyrus koehnei39181
Pyrus korshinskyi11
Pyrus mamorensis43166
Pyrus pashia40362
Pyrus pseudopashia1722
Pyrus pyrifolia482497
Pyrus regelii2269
Pyrus sachokiana11
Pyrus salicifolia44152
Pyrus spinosa37275
Pyrus spp.48218
Pyrus syriaca2095
Pyrus ussuriensis491303
Pyrus x bretschneideri37335
Pyrus x canescens11
Pyrus x complexa24
Pyrus x nivalis44225
Pyrus x phaeocarpa3847
Pyrus x sinkiangensis18
Pyrus x uyematsuana3650
Rubus acanthophyllos11
Rubus adenotrichos33
Rubus allegheniensis725
Rubus alumnus22
Rubus amphidasys44
Rubus anglocandicans33
Rubus apetalus11
Rubus arcticus926
Rubus argutus2561
Rubus armeniacus822
Rubus assamensis44
Rubus axillaris3032
Rubus bambusarum33
Rubus bogotensis12
Rubus briareus12
Rubus buergeri44
Rubus caesius3193
Rubus canadensis2640
Rubus canescens2223
Rubus caucasicus2832
Rubus chamaemorus17
Rubus chingii46
Rubus cissoides11
Rubus clinocephalus611
Rubus cockburnianus67
Rubus columellaris34
Rubus conothyrsoides45
Rubus corchorifolius38
Rubus coreanus1226
Rubus corylifolius33
Rubus crataegifolius2555
Rubus cyri44
Rubus deliciosus33
Rubus distractiformis33
Rubus drejeri2324
Rubus echinatus11
Rubus ellipticus46
Rubus enslenii11
Rubus erythrops45
Rubus eustephanos1219
Rubus flagellaris513
Rubus floribundus38
Rubus flosculosus2137
Rubus formosensis55
Rubus geoides23
Rubus georgicus44
Rubus glabratus35
Rubus glabricarpus11
Rubus glandithyrsos11
Rubus glandulosus33
Rubus glaucus516
Rubus grabowskii2354
Rubus hartmanii44
Rubus hawaiensis47
Rubus henryi1010
Rubus hirsutus2150
Rubus hirtus3084
Rubus hispidus44
Rubus hoffmeisterianus47
Rubus humulifolius22
Rubus hunanensis44
Rubus hybrid331629
Rubus hypargyrus44
Rubus ichangensis33
Rubus idaeus433848
Rubus ikenoensis45
Rubus illecebrosus1922
Rubus innominatus1320
Rubus insularis44
Rubus irenaeus611
Rubus irritans11
Rubus kawakamii11
Rubus kennedyanus11
Rubus laciniatus2936
Rubus lambertianus1225
Rubus lasiococcus1727
Rubus lasiostylus2158
Rubus leucodermis27108
Rubus lindebergii11
Rubus lineatus11
Rubus macilentus44
Rubus macraei11
Rubus macvaughianus47
Rubus megalococcus11
Rubus mesogaeus33
Rubus microphyllus512
Rubus minusculus44
Rubus miszczenkoi33
Rubus moluccanus34
Rubus moschus11
Rubus mulleri46
Rubus neglectus35155
Rubus neomexicanus1724
Rubus nepalensis46
Rubus nessensis11
Rubus nivalis33
Rubus niveus410
Rubus nubigenus36
Rubus nutkanus27108
Rubus occidentalis34346
Rubus odoratus2133
Rubus orarius11
Rubus palmatus511
Rubus parvifolius27143
Rubus parvus33
Rubus pectinellus47
Rubus pedatus510
Rubus pensilvanicus33
Rubus pentalobus55
Rubus phoenicolasius1324
Rubus plicatus2829
Rubus polyanthemos11
Rubus praecox22
Rubus pseudojaponicus33
Rubus pubescens45
Rubus pungens1518
Rubus pyramidalis33
Rubus rigidus1414
Rubus riograndis11
Rubus roseus33
Rubus rosifolius510
Rubus rugosus44
Rubus sachalinensis713
Rubus sanctus512
Rubus saxatilis55
Rubus schmidelioides34
Rubus separinus45
Rubus setchuenensis49
Rubus shankii2432
Rubus sieboldii11
Rubus simplex99
Rubus slesvicensis2989
Rubus spectabilis2588
Rubus spp.28113
Rubus squarrosus67
Rubus sumatranus1718
Rubus swinhoei33
Rubus taiwanicola33
Rubus tephrodes512
Rubus thibetanus44
Rubus trianthus44
Rubus tricolor33
Rubus trifidus1720
Rubus trivialis2791
Rubus tsangiorum44
Rubus tuberculatus11
Rubus ulmifolius2468
Rubus ursinus32148
Rubus urticifolius35
Rubus vermontanus11
Rubus vernus11
Rubus vestitus11
Rubus vigorosus11
Rubus wahlbergii2830
Rubus wallichianus33
Rubus x loganobaccus2861
 
 Publications : 9310 publications
 
 QTL : 4187 QTL and 126 MTL for 410 agronomic traits
 
 Fragaria 507 QTL 5 MTL for 125 traits
Trait CategoryNumber of QTLsNumber of MTLs
1-decanol content80
1-hexanol content10
1-methylbutyl butanoate content20
1-methylhexyl acetate content10
1-methyloctyl butanoate content30
1-octanol content120
1-penten-3-ol content20
1-penten-3-one content60
2,1-pentenyl furan content10
2,3-butanedioldi acetate content10
2-decenal content40
2-heptanol content10
2-heptanone content10
2-heptenal content60
2-hexen-1-ol content30
2-hexenal content10
2-hexenyl acetate content10
2-methylbutyl acetate content50
2-nonanol content30
2-nonanone content40
2-nonenal content10
2-octenal content30
2-pentanone content10
2-pentenal content30
2-pentylfuran content20
2-tridecanol content10
2-undecanol content30
3-hexenal content10
3-hexenyl acetate content10
3-methyl-2-butenyl acetate content20
3-methylbutyl acetate content100
6-methyl-5-hepten-2-one content60
acetone content20
acetophenone content40
alpha farnesene content20
alpha ionone content10
alpha pinene content10
anthocyanin content90
benzaldehyde content20
benzyl acetate content110
beta ionone content10
butyl acetate content70
butyl butanoate content80
butyl hexanoate content100
cinnamyl acetate content70
citric acid content60
day neutrality80
decanal content10
decyl acetate content90
ethanol content10
ethyl 2-hexenoate content10
ethyl acetate content10
ethyl butanoate content10
ethyl decanoate content40
ethyl dodecanoate content20
ethyl hexanoate content20
ethyl methylthioacetate content10
eugenol content50
Female fertility12
fructose content20
fruit color60
fruit diameter40
fruit diameter to length ratio50
fruit dry weight30
fruit firmness90
fruit length70
fruit number60
fruit set30
fruit skin color140
fruit weight60
gamma-decalactone content60
gamma-dodecalactone content50
glucose content50
heptanal content10
heptanol content10
hexanal content10
hexanol content20
hexyl acetate content30
hexyl butanoate content20
hexyl hexanoate content20
L-Ascorbic acid content60
limonene content10
linalool content60
male sterility12
malic acid content40
mesifurane content70
methyl 2-aminobenzoate content20
methyl 2-hexenoate content10
methyl 3-hydroxyoctanoate content10
methyl benzoate content100
methyl butanoate content20
methyl cinnamate content10
methyl decanoate content60
methyl dodecanoate content40
methyl hexanoate content60
methyl octanoate content40
methyl pentanoate content70
myrtenol content60
myrtenyl acetate content40
nerol content30
nerolidol content60
nonanal content10
nonyl acetate content40
octanal content10
octyl acetate content70
octyl butanoate content70
octyl hexanoate content90
pentyl acetate content10
perpetual flowering20
PH90
plant height40
plant width30
propyl butanoate content20
resistance to Colletotrichum acutatum50
resistance to Fusarium oxysporum f. sp. fragariae20
resistance to Gloeosporium and Colletotrichum species10
resistance to Phytophthora cactorum50
resistance to powdery mildew120
ripening time60
sucrose content20
terpineol content110
titratable acidity110
total water soluble content70
vernalization requirement01
yield trait60
 
 Malus 1614 QTL 53 MTL for 149 traits
Trait CategoryNumber of QTLsNumber of MTLs
2-methyl butyl acetate content30
3-octanol content10
allylanisol content40
alpha farnesene content50
base diameter20
base diameter increment80
basis angle of long sylleptic axillary shoots10
beta damascenone content20
bitter pit20
bloom date180
branch number20
butanol content20
butyl 2-methyl butanoate content20
butyl acetate content30
butyl butanoate content40
butyl hexanoate content10
catechin content140
chilling injury resistance20
chlorogenic acid content60
cord bending of long sylleptic axillary shoots20
cyanidin 3-O-arabinoside content50
date of budbreak20
date of green point190
dehydroascorbate content in fruit flesh30
dry matter content330
epicatechin content160
ethylene production40
flesh browning rate220
flowering date20
foliar dehydroascorbate content20
foliar glutathione concentration40
foliar L-ascorbic acid content10
foliar oxidized GSH content40
fructose content120
fruit acidity120
fruit circumference40
fruit color70
fruit crispness80
fruit crunchiness20
fruit diameter260
fruit fibrousness30
fruit firmness170
fruit firmness after storage510
fruit firmness at harvest380
fruit firmness of shaded side of the fruit100
fruit firmness of the sunny side of the fruit70
fruit graininess30
fruit hardness100
fruit height90
fruit juiciness90
fruit length160
fruit mealiness60
fruit meltiness50
fruit number10
fruit russet140
fruit shape200
fruit size130
fruit skin color31
fruit stiffness80
fruit texture2340
fruit weight290
gametophytic incompatibility01
glucose content160
growth rate40
harvest date630
harvest index90
heptanol content10
hexanol content60
hexyl acetate content40
hexyl butanoate content30
hexyl hexanoate content50
internode length120
internode number70
Iso-pentanol content20
juice browning60
juvenile phase length20
L-ascorbic acid content in fruit flesh180
leaf break80
leaf color01
length of the longest internode of long sylleptic axillary shoots20
length of the longest internode of the trunk10
loss of firmness during storage380
malic acid content30
mean internode length of long sylleptic axillary shoots10
mesocarp color01
number of axillary shoots40
number of brindles10
number of flower bunches20
number of latents buds on the trunk20
number of long shoots20
number of spurs20
O-methyl transferase activity10
p-coumaroyl quinic acid content200
pentanol content10
pentyl acetate content20
percentage of long shoots10
phenolic compound content1090
phloridzin-xyloside content10
plant height increment240
plant surface10
plant volume10
preharvest fruit drop20
procyanidin B2 content110
propyl acetate content20
propyl hexanoate content10
quercetin 3-O-arabinofuranoside content10
quercetin 3-O-glucoside content20
quercetin 3-O-rutinoside content20
quercetin 3-O-xyloside content10
resistance to Agrobacterium tumefaciens01
resistance to Botryosphaeria dothidea637
resistance to Dysaphis cf. devecta40
resistance to Dysaphis plantaginea51
resistance to Erwinia amylovora511
resistance to Penicillium expansum20
resistance to powdery mildew360
resistance to Venturia inaequalis638
ripening time20
rooting rate30
rootstock-induced dwarfing30
russet-calyx20
russet-pedicel40
seedling leaf size20
seedling stem diameter40
soft scald50
soggy breakdown40
sorbitol content130
stem diameter150
stem length50
stem node number70
stomatal conductance50
sucrose content140
sugar content70
sugar content of shaded side of the fruit70
sugar content of the sunny side of the fruit80
time of initial vegetative budbreak270
titratable acidity60
total acidity180
total growth increment60
total water soluble content130
transpiration rate60
tree growth morphology01
unbranched upper zone of trunk10
unknown procyanidin oligomer 1 content40
unknown procyanidin oligomer 2 content40
unknown procyanidin oligomer 3 content30
unknown procyanidin oligomer 4 content50
unknown procyanidin oligomer 5 content60
volatile organic compounds content530
 
 Prunus 1741 QTL 40 MTL for 156 traits
Trait CategoryNumber of QTLsNumber of MTLs
abnormal growth after insufficient stratification10
aborting fruit01
amygdalin hydrolase activity30
annual trunk net growth30
anther color01
anthocyanin content30
ATP phosphofructokinase activity50
bloom date1680
broomy growth habit11
chilling injury resistance530
chilling requirement1280
citrate content70
citric acid content70
cyanidin 3-O-glucoside content20
cyanidin 3-O-rutinoside content30
date of budbreak30
days to maturity600
double flower01
ecodormancy release date40
endodormancy release date50
evergrowing01
firmness loss280
flavonoid content50
flesh adhesion141
flesh color around the stone71
flower color22
flowering date500
flowering time100
flower shape02
fresh weight30
fructokinase activity160
fructose-1,6-bisphosphatase activity30
fructose content350
fruit chewiness40
fruit cohesiveness40
fruit color30
Fruit depth180
fruit development period420
fruit diameter90
fruit firmness260
fruit flavor trait10
fruit flesh color120
fruit fresh weight170
fruit gumminess60
fruit hairiness01
fruit hardness80
fruit height110
fruit resilience20
fruit ripening trait40
fruit shape31
fruit size60
fruit skin color301
fruit springiness20
fruit texture70
fruit weight720
Fruit width180
gametophytic incompatibility43
germination date50
glucose content300
glucosyltransferase activity trait30
heat requirement170
heat requirement for blooming20
heat requirement for ecodormancy release40
hexokinase activity150
hybrid incompatibility01
internode length30
kernel diameter20
kernel length40
kernel spherical index10
kernel taste31
kernel thickness30
kernel weight10
kernel width20
late blooming41
leaf area20
leaf color21
leaf gland01
leaf length40
leaf shape71
leaf vein density50
leaf vein number60
leaf width50
linoleic acid content20
malate content130
male sterility01
malic acid content80
mandelonitrile lyase activity20
mesocarp color312
nematode damage resistance01
neochlorogenic acid content50
neutral invertase activity20
non-acid fruit01
nut diameter20
nut length40
nut size20
nut spherical index40
nut thickness30
nut weight20
nut width30
oleic acid content20
palmitic acid content20
palmitoleic acid content40
p-coumaric acid content20
p-coumaroyl quinic acid content20
peonidin 3-O-glucoside content30
peonidin 3-O-rutinoside content30
period of time between endodormancy and ecodormancy release20
period of time between endodormancy release and blooming50
petiole length30
PH90
phenolic compound content30
phosphoglucomutase activity70
pistil death20
plant height11
pollen germination20
polycarpel01
protein content20
prunasin hydrolase activity40
quinic acid content10
red skin pigmentation130
relative antioxidant capacity30
resistance to Dysaphis cf. devecta320
resistance to Meloidogyne arenaria61
resistance to Meloidogyne incognita32
resistance to Meloidogyne javanica01
resistance to Monilinia fructicola310
resistance to Myzus persicae91
resistance to peach tree short life syndrome90
resistance to plum pox virus362
resistance to powdery mildew871
resistance to Pseudomonas syringae pv. Syringae70
resistance to Xanthomonas arboricola pv. Pruni130
restistance to Candidatus Phytoplasma pruni40
ripening time681
seed set number30
seed size10
shell hardness61
sorbitol content200
sorbitol oxidase activity20
stearic acid content50
stem diameter30
stem length20
stem taper50
stratification requirement20
sucrose content330
sugar content40
titratable acidity180
tocopherol homologues content50
total acidity130
total branch number20
total fat content20
total water soluble content590
tree shape30
trunk diameter120
UDP-glucose pyrophosphorylase activity70
yield trait30
 
 Pyrus 47 QTL 3 MTL for 16 traits
Trait CategoryNumber of QTLsNumber of MTLs
fruit color40
fruit juiciness20
fruit seed number60
fruit skin texture20
fruit transverse diameter30
fruit vertical diameter30
fruit weight20
gametophytic incompatibility01
leaf color01
mesocarp color20
pedicel length30
resistance to Cacopsylla pyri110
resistance to Venturia nashicola01
russet-calyx20
scab resistance40
total water soluble content30
 
 Rosa 168 QTL 17 MTL for 31 traits
Trait CategoryNumber of QTLsNumber of MTLs
anther color01
bloom date10
chlorophyll content80
days to flowering20
double flower02
flower color02
flower size40
gametophytic incompatibility01
geranyl acetate content02
growth rate100
internode length10
internode number80
leaf area80
leaf dry weight100
leaf size50
nerol content01
neryl acetate content01
perpetual flowering01
petal number22
plant height50
presence of prickles31
prickles on the petiole01
resistance to Diplocarpon rosae01
resistance to powdery mildew511
shoot dry weight100
shoot habit60
specific leaf area80
stem angle20
stem diameter100
stem dry weight80
stem length60
 
 Rubus 110 QTL 8 MTL for 33 traits
Trait CategoryNumber of QTLsNumber of MTLs
caffeic acid glucoside content40
caffeic acid unknown content20
cane pubescence01
catechin unknown content30
chilling requirement70
cyanidin 3-O-2G-glucosylrutinoside content90
cyanidin 3-O-2G-xylosylrutinoside content30
cyanidin 3-O-2G-xylosylrutinoside & cyanidin 3-O-rutinoside content40
cyanidin 3-O-glucoside content30
cyanidin 3-O-glucoside & cyanidin 3-O-sambubioside content50
cyanidin 3-O-rutinoside content50
cyanidin 3-O-sophoroside content110
floricane fruiting01
fruit color20
fruit length10
fruit shape10
fruit size10
fruit texture130
fruit weight40
p-coumaric glucoside content60
pelargonidin 3-O-glucoside content20
pelargonidin 3-O-glucosylrutinoside content30
pelargonidin 3-O-rutinoside content60
petal color20
plant height01
presence of prickles22
quercetin 3-O-rutinoside content20
quercetin glucoside content20
quercetin glucuronide content30
quercetin unknown content40
resistance to Amphorophora agathonica01
resistance to Amphorophora idaei01
resistance to large raspberry aphid01
 
 SNP Genotype : 99014 markers 131153737 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Prunus persica47636861429
Prunus armeniaca953515
Rosaceae Family Genera sp.5362144
Fragaria x ananassa105443085712
Malus x domestica128107305668
Prunus avium49141217952
Prunus cerasus765331632
Pyrus communis64562112325334
Pyrus x bretschneideri915656
Fragaria iinumae164695
 
 SSR Genotype : 5041 markers 69398 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Malus x domestica400052276
Prunus armeniaca14218
Prunus avium36510026
Prunus cerasus164560
Prunus dulcis13
Prunus persica445155
Prunus salicina153
Pyrus pyrifolia227
Pyrus sp.229
Rosaceae Family Genera sp.4481051
Total504169398
 
 Species : 2303 species
GenusNumber of species
Acaena25
Adenostoma1
Agrimonia14
Alchemilla101
Amelanchier36
Amygdalus6
Aphanes4
Arabidopsis1
Aremonia1
Argentina6
Aria4
Armeniaca1
Aronia6
Aruncus3
Bencomia5
Cerasus1
Cercocarpus6
Chaenomeles3
Chamaebatia1
Chamaebatiaria1
Chamaecallis1
Chamaemeles1
Chamaemespilus1
Chamaerhodos4
Cliffortia149
Coleogyne1
Coluria2
Comarum2
Cormus1
Cotoneaster71
Crataegus113
Cydonia1
Dasiphora4
Dendriopoterium2
Dichotomanthes1
Docynia2
Docyniopsis1
Dryas8
Drymocallis6
Duchesnea1
Eriobotrya12
Eriolobus1
Exochorda3
Fallopia1
Fallugia1
Filipendula3
Fragaria54
Geum29
Gillenia2
Hagenia1
Hesperomeles2
Heteromeles1
Holodiscus3
Horkelia5
Horkeliella1
Ivesia11
Kageneckia3
Kelseya1
Kerria2
Lachemilla4
Leucosidea1
Lindleya1
Luetkea1
Lyonothamnus3
Malacomeles1
Maleae1
Malus115
Marcetella2
Margyricarpus3
Mespilus2
Neillia12
Neviusia2
null1
Oemleria1
Osteomeles3
Pentactina1
Peraphyllum1
Petrophytum2
Phippsiomeles1
Photinia32
Physocarpus9
Pisum1
Polylepis24
Potaninia1
Potentilla143
Poterium2
Pourthiaea3
Prinsepia5
Prunus295
Prunus (and Cerasus)1
Pseudocydonia1
Purshia3
Pygeum8
Pyracantha5
Pyronia1
Pyrus57
Rhaphiolepis2
Rhodotypos1
Rosa224
Rosaceae2
Rosaceae Family Genera1
Rubus386
Sanguisorba15
Sarcopoterium1
Sibbaldia6
Sibbaldianthe3
Sibbaldiopsis1
Sibiraea4
Sieversia2
Solanum1
Sorbaria5
Sorbus86
Spenceria1
Spiraea55
Stranvaesia5
synthetic1
Taihangia1
Tetraglochin7
Torminalis2
Vauquelinia4
Waldsteinia1
Xerospiraea1
xPyronia1
xSorbopyrus1
 
 Transcripts
SourceNumber of features
Fragaria ananassa GDR RefTrans V174947
Fragaria Unigene v5.0contigs : 6226
singlets : 12008
Malus Unigene v5.0contigs : 25525
singlets : 60918
Malus x domestica GDR RefTrans V1482648
Prunus avium GDR RefTrans V1257186
Prunus persica GDR RefTrans V1168828
Prunus Unigene v5.0contigs : 10934
singlets : 22957
Pyrus GDR RefTrans V1.063681
Pyrus Unigene v5.0contigs : 259
singlets : 964
Rosaceae Family Unigene v5.0contigs : 33916
singlets : 166551
Rosa GDR RefTrans V1.040539
Rosa Unigene v5.0contigs : 1215
singlets : 3707
Rubus GDR RefTrans V137326
Rubus GDR RefTrans V244291
Rubus Unigene v5.0contigs : 359
singlets : 1734