RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1, RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1
Aliasss475876705
rs267609652
b475876705
SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1
AX-105190778
dbSNP IDss475876705
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCCTTTATGGGGCCTTAGGTGTAGGCCTTCCCTTTC
3' Flanking SequenceCTTGGATTCAATAATATTTCTTCAGGAGGAGTGA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1 ID=RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1|Name=RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
CCTTTATGGGGCCTTAGGTGTAGGCCTTCCCTTTCYCTTGGATTCAATAA
TATTTCTTCAGGAGGAGTGA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A10.24RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A12162359RosBREEDSNP_SNP_TC_12162359_Lg1_00420_MAF30_MDP0000205356_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC006289.406 contig MDC006289.406:3346..3346. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:16611952..16611952. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:16611951..16611951. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation