RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1, RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1
Aliasss475876773
rs267609720
c475876773
SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1
R_17236158_L1_PA
AX-105200250
dbSNP IDss475876773
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1
50K SNP array for apple:RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1
TypeSNP
SNP AllelesT/C
Probe 1RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1.probe: ATATCAAACGATTTAGTGGGACAGAATTGTCTTCCCATTTGTTTTGCGGG
5' Flanking SequenceAAAAAGAGAGAGAAACTAAAAGATTAAGGGAAGAAAAAAGAAATCGAGGACTTTAAAGCA C
3' Flanking SequenceCCCGCAAAACAAATGGGAAGACAATTCTGTCCCACTAAATCGTTTGATATGCAAAAAGTG A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1-20.656Malus x domesticamarker_locus
RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1-38.94Malus x domesticamarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Mdo-HB-01-18aMdo-HB-01-18aMalus x domesticahaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Mdo-HB-01-18a_2Malus x domesticahaplotype
3Mdo-HB-01-18a_3Malus x domesticahaplotype
4Mdo-HB-01-18a_4Malus x domesticahaplotype
5Mdo-HB-01-18a_5Malus x domesticahaplotype
6Mdo-HB-01-18a_6Malus x domesticahaplotype
7Mdo-HB-01-18a_7Malus x domesticahaplotype
8Mdo-HB-01-18a_8Malus x domesticahaplotype
9Mdo-HB-01-18a_9Malus x domesticahaplotype
10Mdo-HB-01-18a_10Malus x domesticahaplotype
11Mdo-HB-01-18a_11Malus x domesticahaplotype
12Mdo-HB-01-18a_12Malus x domesticahaplotype
13Mdo-HB-01-18a_13Malus x domesticahaplotype
14Mdo-HB-01-18a_14Malus x domesticahaplotype
15Mdo-HB-01-18a_15Malus x domesticahaplotype
16Mdo-HB-01-18a_16Malus x domesticahaplotype
17Mdo-HB-01-18a_17Malus x domesticahaplotype
18Mdo-HB-01-18a_18Malus x domesticahaplotype
19Mdo-HB-01-18a_19Malus x domesticahaplotype
20Mdo-HB-01-18a_20Malus x domesticahaplotype
21Mdo-HB-01-18a_21Malus x domesticahaplotype
22Mdo-HB-01-18a_22Malus x domesticahaplotype
23Mdo-HB-01-18a_23Malus x domesticahaplotype
24Mdo-HB-01-18a_24Malus x domesticahaplotype
25Mdo-HB-01-18a_25Malus x domesticahaplotype
26Mdo-HB-01-18a_26Malus x domesticahaplotype
27Mdo-HB-01-18a_27Malus x domesticahaplotype
28Mdo-HB-01-18a_28Malus x domesticahaplotype
29Mdo-HB-01-18a_29Malus x domesticahaplotype
30Mdo-HB-01-18a_30Malus x domesticahaplotype
31Mdo-HB-01-18a_31Malus x domesticahaplotype
32Mdo-HB-01-18a_32Malus x domesticahaplotype
33Mdo-HB-01-18a_33Malus x domesticahaplotype
34Mdo-HB-01-18a_34Malus x domesticahaplotype
35Mdo-HB-01-18a_35Malus x domesticahaplotype
36Mdo-HB-01-18a_36Malus x domesticahaplotype
37Mdo-HB-01-18a_37Malus x domesticahaplotype
38Mdo-HB-01-18a_38Malus x domesticahaplotype
39Mdo-HB-01-18a_39Malus x domesticahaplotype
40Mdo-HB-01-18a_40Malus x domesticahaplotype
41Mdo-HB-01-18a_41Malus x domesticahaplotype
42Mdo-HB-01-18a_42Malus x domesticahaplotype
43Mdo-HB-01-18a_43Malus x domesticahaplotype
44Mdo-HB-01-18a_44Malus x domesticahaplotype
45Mdo-HB-01-18a_45Malus x domesticahaplotype
46Mdo-HB-01-18a_46Malus x domesticahaplotype
47Mdo-HB-01-18a_47Malus x domesticahaplotype
48Mdo-HB-01-18a_48Malus x domesticahaplotype
49Mdo-HB-01-18a_49Malus x domesticahaplotype
50Mdo-HB-01-18a_50Malus x domesticahaplotype
51Mdo-HB-01-18a_51Malus x domesticahaplotype
52Mdo-HB-01-18a_52Malus x domesticahaplotype
53Mdo-HB-01-18a_53Malus x domesticahaplotype
54Mdo-HB-01-18a_54Malus x domesticahaplotype
55Mdo-HB-01-18a_55Malus x domesticahaplotype
56Mdo-HB-01-18a_56Malus x domesticahaplotype
57Mdo-HB-01-18a_57Malus x domesticahaplotype
58Mdo-HB-01-18a_58Malus x domesticahaplotype
59Mdo-HB-01-18a_59Malus x domesticahaplotype
60Mdo-HB-01-18a_60Malus x domesticahaplotype
61Mdo-HB-01-18a_61Malus x domesticahaplotype
62Mdo-HB-01-18a_62Malus x domesticahaplotype
63Mdo-HB-01-18a_63Malus x domesticahaplotype
64Mdo-HB-01-18a_64Malus x domesticahaplotype
65Mdo-HB-01-18a_65Malus x domesticahaplotype
66Mdo-HB-01-18a_66Malus x domesticahaplotype
67Mdo-HB-01-18a_67Malus x domesticahaplotype
68Mdo-HB-01-18a_68Malus x domesticahaplotype
69Mdo-HB-01-18a_69Malus x domesticahaplotype
70Mdo-HB-01-18a_70Malus x domesticahaplotype
71Mdo-HB-01-18a_71Malus x domesticahaplotype
72Mdo-HB-01-18a_72Malus x domesticahaplotype
73Mdo-HB-01-18a_73Malus x domesticahaplotype
74Mdo-HB-01-18a_74Malus x domesticahaplotype
75Mdo-HB-01-18a_75Malus x domesticahaplotype
76Mdo-HB-01-18a_76Malus x domesticahaplotype
77Mdo-HB-01-18a_77Malus x domesticahaplotype
78Mdo-HB-01-18a_78Malus x domesticahaplotype
79Mdo-HB-01-18a_79Malus x domesticahaplotype
80Mdo-HB-01-18a_80Malus x domesticahaplotype
81Mdo-HB-01-18a_81Malus x domesticahaplotype
82Mdo-HB-01-18a_82Malus x domesticahaplotype
83Mdo-HB-01-18a_83Malus x domesticahaplotype
84Mdo-HB-01-18a_84Malus x domesticahaplotype
85Mdo-HB-01-18a_85Malus x domesticahaplotype
86Mdo-HB-01-18a_86Malus x domesticahaplotype
87Mdo-HB-01-18a_87Malus x domesticahaplotype
88Mdo-HB-01-18a_88Malus x domesticahaplotype
89Mdo-HB-01-18a_89Malus x domesticahaplotype
90Mdo-HB-01-18a_90Malus x domesticahaplotype
91Mdo-HB-01-18a_91Malus x domesticahaplotype
92Mdo-HB-01-18a_92Malus x domesticahaplotype
93Mdo-HB-01-18a_93Malus x domesticahaplotype
94Mdo-HB-01-18a_94Malus x domesticahaplotype
95Mdo-HB-01-18a_95Malus x domesticahaplotype
96Mdo-HB-01-18a_96Malus x domesticahaplotype
97Mdo-HB-01-18a_97Malus x domesticahaplotype
98Mdo-HB-01-18a_98Malus x domesticahaplotype
99Mdo-HB-01-18a_99Malus x domesticahaplotype
100Mdo-HB-01-18a_100Malus x domesticahaplotype
101Mdo-HB-01-18a_101Malus x domesticahaplotype
102Mdo-HB-01-18a_102Malus x domesticahaplotype
103Mdo-HB-01-18a_103Malus x domesticahaplotype
104Mdo-HB-01-18a_104Malus x domesticahaplotype
105Mdo-HB-01-18a_105Malus x domesticahaplotype
106Mdo-HB-01-18a_106Malus x domesticahaplotype
107Mdo-HB-01-18a_107Malus x domesticahaplotype
108Mdo-HB-01-18a_108Malus x domesticahaplotype
109Mdo-HB-01-18a_109Malus x domesticahaplotype
110Mdo-HB-01-18a_110Malus x domesticahaplotype
111Mdo-HB-01-18a_111Malus x domesticahaplotype
112Mdo-HB-01-18a_112Malus x domesticahaplotype
113Mdo-HB-01-18a_113Malus x domesticahaplotype
114Mdo-HB-01-18a_114Malus x domesticahaplotype
115Mdo-HB-01-18a_115Malus x domesticahaplotype
116Mdo-HB-01-18a_116Malus x domesticahaplotype
117Mdo-HB-01-18a_117Malus x domesticahaplotype
118Mdo-HB-01-18a_118Malus x domesticahaplotype
119Mdo-HB-01-18a_119Malus x domesticahaplotype
120Mdo-HB-01-18a_120Malus x domesticahaplotype
121Mdo-HB-01-18a_121Malus x domesticahaplotype
122Mdo-HB-01-18a_122Malus x domesticahaplotype
123Mdo-HB-01-18a_123Malus x domesticahaplotype
124Mdo-HB-01-18a_124Malus x domesticahaplotype
125Mdo-HB-01-18a_125Malus x domesticahaplotype
126Mdo-HB-01-18a_126Malus x domesticahaplotype
127Mdo-HB-01-18a_127Malus x domesticahaplotype
128Mdo-HB-01-18a_128Malus x domesticahaplotype
129Mdo-HB-01-18a_129Malus x domesticahaplotype
130Mdo-HB-01-18a_130Malus x domesticahaplotype
131Mdo-HB-01-18a_131Malus x domesticahaplotype
132Mdo-HB-01-18a_132Malus x domesticahaplotype
133Mdo-HB-01-18a_133Malus x domesticahaplotype
134Mdo-HB-01-18a_134Malus x domesticahaplotype
135Mdo-HB-01-18a_135Malus x domesticahaplotype
136Mdo-HB-01-18a_136Malus x domesticahaplotype
137Mdo-HB-01-18a_137Malus x domesticahaplotype
138Mdo-HB-01-18a_138Malus x domesticahaplotype
139Mdo-HB-01-18a_139Malus x domesticahaplotype
140Mdo-HB-01-18a_140Malus x domesticahaplotype
141Mdo-HB-01-18a_141Malus x domesticahaplotype
142Mdo-HB-01-18a_142Malus x domesticahaplotype
143Mdo-HB-01-18a_143Malus x domesticahaplotype
144Mdo-HB-01-18a_144Malus x domesticahaplotype
145Mdo-HB-01-18a_145Malus x domesticahaplotype
146Mdo-HB-01-18a_146Malus x domesticahaplotype
147Mdo-HB-01-18a_147Malus x domesticahaplotype
148Mdo-HB-01-18a_148Malus x domesticahaplotype
149Mdo-HB-01-18a_149Malus x domesticahaplotype
150Mdo-HB-01-18a_150Malus x domesticahaplotype
151Mdo-HB-01-18a_151Malus x domesticahaplotype
152Mdo-HB-01-18a_152Malus x domesticahaplotype
153Mdo-HB-01-18a_153Malus x domesticahaplotype
154Mdo-HB-01-18a_154Malus x domesticahaplotype
155Mdo-HB-01-18a_155Malus x domesticahaplotype
156Mdo-HB-01-18a_156Malus x domesticahaplotype
157Mdo-HB-01-18a_157Malus x domesticahaplotype
158Mdo-HB-01-18a_158Malus x domesticahaplotype
159Mdo-HB-01-18a_159Malus x domesticahaplotype
160Mdo-HB-01-18a_160Malus x domesticahaplotype
161Mdo-HB-01-18a_161Malus x domesticahaplotype
162Mdo-HB-01-18a_162Malus x domesticahaplotype
163Mdo-HB-01-18a_163Malus x domesticahaplotype
164Mdo-HB-01-18a_164Malus x domesticahaplotype
165Mdo-HB-01-18a_165Malus x domesticahaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1 ID=RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1|Name=RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1|organism=Malus x domestica|type=genetic_marker|length=75bp
AGGGAAGAAAAAAGAAATCGAGGACTTTAAAGCAC[A/G]CCCGCAAAAC
AAATGGGAAGACAATTCTGTCCCAC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A26.51RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A17236158RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
3Apple-RosBREED-3.9K-20191N/A20.66RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
4Apple-BB-F11N/A26.55RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
5Apple-NC-F11N/A41.02RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
6Apple-NCZFBB-consensus1N/A23.98RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
7Apple-ZF-F11N/A28.22RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
8Apple-Honeycrisp_Consensus-F11N/A20.66RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
9Pear-PH-CG-2017LG1N/A38.94RosBREEDSNP_SNP_AG_17236158_Lg1_RosCOS3372_MAF30_45786_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC009632.125 contig MDC009632.125:24937..24937. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:21502953..21502953- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:21502954..21502954. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation