RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1, RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1
Aliasss475877250
rs267610197
c475877250
SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1
AX-105181230
dbSNP IDss475877250
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTGTATAGGAAGACCCTTATTTGTGGAAATATTGCC
3' Flanking SequenceTGATGCATGATTCTGAATTTAATTCAATTTTAAA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1 ID=RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1|Name=RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
TGTATAGGAAGACCCTTATTTGTGGAAATATTGCCYTGATGCATGATTCT
GAATTTAATTCAATTTTAAA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A2.35RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1View
2Apple-M432-2013-physical-Malus-domestica2N/A16845711RosBREEDSNP_SNP_CT_16845711_Lg2_RosCOS836_MAF40_MDP0000677244_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC003450.364 contig MDC003450.364:4608..4608. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:1780134..1780134. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:1780132..1780132. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation