RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1, RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1
Aliasss475876646
rs267609593
c475876646
SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1
AX-105207238
dbSNP IDss475876646
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCTTTTGTGCAGCACCTAGATCCTTCATATCAAACT
3' Flanking SequenceCTCGCTTAACATGTTTTTCAAGTCTTGAATTCTA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1Malus x domesticamarker_locus
RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1-79.93Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1 ID=RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1|Name=RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
CTTTTGTGCAGCACCTAGATCCTTCATATCAAACTYCTCGCTTAACATGT
TTTTCAAGTCTTGAATTCTA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A2.35RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A112151RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1View
3Pear-PH-CG-2017LG1N/A79.93RosBREEDSNP_SNP_CT_112151_Lg1_00288_MAF30_MDP0000524001_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC021228.344 contig MDC021228.344:3534..3534. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:458080..458080. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:458079..458079. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation