RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1, RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1
Aliasss475876684
rs267609631
b475876684
SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1
AX-105196496
dbSNP IDss475876684
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1
50K SNP array for apple:RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1
TypeSNP
SNP AllelesT/G
5' Flanking SequenceTCTTCCTTCACTCATGTGTTGAGGAGGACCCAGAG
3' Flanking SequenceAGCCAGAGTTGTAGGGTTAAGGAATTGGGATTTT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1 ID=RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1|Name=RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
TCTTCCTTCACTCATGTGTTGAGGAGGACCCAGAGKAGCCAGAGTTGTAG
GGTTAAGGAATTGGGATTTT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A3.84RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A9938879RosBREEDSNP_SNP_TG_9938879_Lg1_RosCOS404_MAF30_563387_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC023054.83 contig MDC023054.83:5347..5347. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:14618522..14618522. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:14618521..14618521. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation