RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1, RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1
Aliasss475883866
rs267616406
c475883866
SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1
AX-105179098
dbSNP IDss475883866
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceATCAACAGGGAACCGTCCCACCAGCAGTTCCAGAC
3' Flanking SequenceTCCAGCCCGATTTCCGTCCTCGACAGCAGCAGCT
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1 ID=RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1|Name=RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
ATCAACAGGGAACCGTCCCACCAGCAGTTCCAGACYTCCAGCCCGATTTC
CGTCCTCGACAGCAGCAGCT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A27RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1View
2Apple-M432-2013-physical-Malus-domestica1N/A17847470RosBREEDSNP_SNP_CT_17847470_Lg1_RosCOS3660_MAF20_389966_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC008059.78 contig MDC008059.78:9878..9878. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01 chromosome Chr01:22084878..22084878. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr01 chromosome Chr01:22084877..22084877. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation