RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1, RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1
Aliasss475876221
rs267609171
c475876221
SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1
AX-105221081
dbSNP IDss475876221
SNP Array ID
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1
50K SNP array for apple:RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGTCAATGGCATAAGTCCTGGGCCGACCATACATGC
3' Flanking SequenceCAGCAGGGCGACACAGTCATCGTTGAGGTTACTA
SpeciesMalus x domestica
Publication[view all]
Libraries
Library NameType
IRSC 9K SNP array for appleSNP_chip
50K SNP array for appleSNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1 ID=RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1|Name=RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1|organism=Malus x domestica|type=genetic_marker|length=70bp
GTCAATGGCATAAGTCCTGGGCCGACCATACATGCYCAGCAGGGCGACAC
AGTCATCGTTGAGGTTACTA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-20131N/A0RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1View
2Apple-M432-2013-physical-Malus-domestica10N/A21989766RosBREEDSNP_SNP_CT_21989766_Lg10_MDP0000131142_MAF10_MDP0000131142_exon1View
Alignments
Feature NameTypeLocationAnalysis
MDC019509.309 contig MDC019509.309:2759..2759. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr15 chromosome Chr15:36170355..36170355. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr15 chromosome Chr15:36170353..36170353. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation