RosBREED_snp_sweet_cherry_Pp1_07824263, RosBREED_snp_sweet_cherry_Pp1_07824263 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_07824263
AliasRosBREED_snp_sweet_1_07824263
ss490546020
rs271786398
Rsweet_1_07824263
dbSNP IDss490546020
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_07824263
TypeSNP
SNP AllelesT/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_07824263Rsweet_1_07824263Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_07824263RosBREED_snp_sweet_cherry_Pp1_07824263Prunus aviummarker_locus
ss490546020ss490546020Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_07824263RosBREED_snp_sweet_cherry_Pp1_07824263-33.238Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-6Pav-HB-01-6Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-6_2Prunus aviumhaplotype
3Pav-HB-01-6_3Prunus aviumhaplotype
4Pav-HB-01-6_4Prunus aviumhaplotype
5Pav-HB-01-6_5Prunus aviumhaplotype
6Pav-HB-01-6_6Prunus aviumhaplotype
7Pav-HB-01-6_7Prunus aviumhaplotype
8Pav-HB-01-6_8Prunus aviumhaplotype
9Pav-HB-01-6_9Prunus aviumhaplotype
10Pav-HB-01-6_10Prunus aviumhaplotype
11Pav-HB-01-6_11Prunus aviumhaplotype
12Pav-HB-01-6_12Prunus aviumhaplotype
13Pav-HB-01-6_13Prunus aviumhaplotype
14Pav-HB-01-6_14Prunus aviumhaplotype
15Pav-HB-01-6_15Prunus aviumhaplotype
16Pav-HB-01-6_16Prunus aviumhaplotype
17Pav-HB-01-6_17Prunus aviumhaplotype
18Pav-HB-01-6_18Prunus aviumhaplotype
19Pav-HB-01-6_19Prunus aviumhaplotype
20Pav-HB-01-6_20Prunus aviumhaplotype
21Pav-HB-01-6_21Prunus aviumhaplotype
22Pav-HB-01-6_22Prunus aviumhaplotype
23Pav-HB-01-6_23Prunus aviumhaplotype
24Pav-HB-01-6_24Prunus aviumhaplotype
25Pav-HB-01-6_25Prunus aviumhaplotype
26Pav-HB-01-6_26Prunus aviumhaplotype
27Pav-HB-01-6_27Prunus aviumhaplotype
28Pav-HB-01-6_28Prunus aviumhaplotype
29Pav-HB-01-6_29Prunus aviumhaplotype
30Pav-HB-01-6_30Prunus aviumhaplotype
31Pav-HB-01-6_31Prunus aviumhaplotype
32Pav-HB-01-6_32Prunus aviumhaplotype
33Pav-HB-01-6_33Prunus aviumhaplotype
34Pav-HB-01-6_34Prunus aviumhaplotype
35Pav-HB-01-6_35Prunus aviumhaplotype
36Pav-HB-01-6_36Prunus aviumhaplotype
37Pav-HB-01-6_37Prunus aviumhaplotype
38Pav-HB-01-6_38Prunus aviumhaplotype
39Pav-HB-01-6_39Prunus aviumhaplotype
40Pav-HB-01-6_40Prunus aviumhaplotype
41Pav-HB-01-6_41Prunus aviumhaplotype
42Pav-HB-01-6_42Prunus aviumhaplotype
43Pav-HB-01-6_43Prunus aviumhaplotype
44Pav-HB-01-6_44Prunus aviumhaplotype
45Pav-HB-01-6_45Prunus aviumhaplotype
46Pav-HB-01-6_46Prunus aviumhaplotype
47Pav-HB-01-6_47Prunus aviumhaplotype
48Pav-HB-01-6_48Prunus aviumhaplotype
49Pav-HB-01-6_49Prunus aviumhaplotype
50Pav-HB-01-6_50Prunus aviumhaplotype
51Pav-HB-01-6_51Prunus aviumhaplotype
52Pav-HB-01-6_52Prunus aviumhaplotype
53Pav-HB-01-6_53Prunus aviumhaplotype
54Pav-HB-01-6_54Prunus aviumhaplotype
55Pav-HB-01-6_55Prunus aviumhaplotype
56Pav-HB-01-6_56Prunus aviumhaplotype
57Pav-HB-01-6_57Prunus aviumhaplotype
58Pav-HB-01-6_58Prunus aviumhaplotype
59Pav-HB-01-6_59Prunus aviumhaplotype
60Pav-HB-01-6_60Prunus aviumhaplotype
61Pav-HB-01-6_61Prunus aviumhaplotype
62Pav-HB-01-6_62Prunus aviumhaplotype
63Pav-HB-01-6_63Prunus aviumhaplotype
64Pav-HB-01-6_64Prunus aviumhaplotype
65Pav-HB-01-6_65Prunus aviumhaplotype
66Pav-HB-01-6_66Prunus aviumhaplotype
67Pav-HB-01-6_67Prunus aviumhaplotype
68Pav-HB-01-6_68Prunus aviumhaplotype
69Pav-HB-01-6_69Prunus aviumhaplotype
70Pav-HB-01-6_70Prunus aviumhaplotype
71Pav-HB-01-6_71Prunus aviumhaplotype
72Pav-HB-01-6_72Prunus aviumhaplotype
73Pav-HB-01-6_73Prunus aviumhaplotype
74Pav-HB-01-6_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L1N/A14.42Rsweet_1_07824263View
2Prunus-TE-6K cherry SNP-estimate1N/A11.58RosBREED_snp_sweet_cherry_Pp1_07824263View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A35.55RosBREED_snp_sweet_cherry_Pp1_07824263View
4Sweet Cherry-C-F1LG1N/A13.38RosBREED_snp_sweet_cherry_Pp1_07824263View
5Sweet Cherry-VxC-F1LG1N/A29.67RosBREED_snp_sweet_cherry_Pp1_07824263View
6Sweet Cherry-CxC-F2LG1N/A10.06RosBREED_snp_sweet_cherry_Pp1_07824263View
7Sweet Cherry-BCxBC-F2LG1N/A20.6RosBREED_snp_sweet_cherry_Pp1_07824263View
8Sweet Cherry-RL-F1-2014L1N/A17.9RosBREED_snp_sweet_cherry_Pp1_07824263View
9Sweet Cherry-RosBREED-3.8K-20201N/A19.29RosBREED_snp_sweet_cherry_Pp1_07824263View
10Sweet Cherry-RosBREED-1.6K-20191N/A18.51RosBREED_snp_sweet_cherry_Pp1_07824263View
11Sweet Cherry-A-F11N/A43.21RosBREED_snp_sweet_cherry_Pp1_07824263View
12Sweet Cherry-AxS-F11N/A43.21RosBREED_snp_sweet_cherry_Pp1_07824263View
13Sweet Cherry-C-F1-6+9K_array1N/A16.24RosBREED_snp_sweet_cherry_Pp1_07824263View
14Sweet Cherry-VxC-F1-6+9K_array1N/A1.94RosBREED_snp_sweet_cherry_Pp1_07824263View
15Sweet Cherry-RL-Lapins-2013LG01N/A16.1ss490546020View
16Sweet Cherry-RL-F1-2013LG01N/A18.5ss490546020View
17SweetCherry-FX-F1-XX1N/A33.24RosBREED_snp_sweet_cherry_Pp1_07824263View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:7824263..7824263. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:8273624..8273624. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:6326174..6326174. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)