RosBREED_snp_sweet_cherry_Pp1_05962255, RosBREED_snp_sweet_cherry_Pp1_05962255 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_05962255
AliasRosBREED_snp_sweet_1_05962255
ss490545860
rs271786358
Rsweet_1_05962255
dbSNP IDss490545860
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_05962255
TypeSNP
SNP AllelesA/G
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_05962255Rsweet_1_05962255Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_05962255RosBREED_snp_sweet_cherry_Pp1_05962255Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_05962255RosBREED_snp_sweet_cherry_Pp1_05962255-13.53Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-3Pav-HB-01-3Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-3_2Prunus aviumhaplotype
3Pav-HB-01-3_3Prunus aviumhaplotype
4Pav-HB-01-3_4Prunus aviumhaplotype
5Pav-HB-01-3_5Prunus aviumhaplotype
6Pav-HB-01-3_6Prunus aviumhaplotype
7Pav-HB-01-3_7Prunus aviumhaplotype
8Pav-HB-01-3_8Prunus aviumhaplotype
9Pav-HB-01-3_9Prunus aviumhaplotype
10Pav-HB-01-3_10Prunus aviumhaplotype
11Pav-HB-01-3_11Prunus aviumhaplotype
12Pav-HB-01-3_12Prunus aviumhaplotype
13Pav-HB-01-3_13Prunus aviumhaplotype
14Pav-HB-01-3_14Prunus aviumhaplotype
15Pav-HB-01-3_15Prunus aviumhaplotype
16Pav-HB-01-3_16Prunus aviumhaplotype
17Pav-HB-01-3_17Prunus aviumhaplotype
18Pav-HB-01-3_18Prunus aviumhaplotype
19Pav-HB-01-3_19Prunus aviumhaplotype
20Pav-HB-01-3_20Prunus aviumhaplotype
21Pav-HB-01-3_21Prunus aviumhaplotype
22Pav-HB-01-3_22Prunus aviumhaplotype
23Pav-HB-01-3_23Prunus aviumhaplotype
24Pav-HB-01-3_24Prunus aviumhaplotype
25Pav-HB-01-3_25Prunus aviumhaplotype
26Pav-HB-01-3_26Prunus aviumhaplotype
27Pav-HB-01-3_27Prunus aviumhaplotype
28Pav-HB-01-3_28Prunus aviumhaplotype
29Pav-HB-01-3_29Prunus aviumhaplotype
30Pav-HB-01-3_30Prunus aviumhaplotype
31Pav-HB-01-3_31Prunus aviumhaplotype
32Pav-HB-01-3_32Prunus aviumhaplotype
33Pav-HB-01-3_33Prunus aviumhaplotype
34Pav-HB-01-3_34Prunus aviumhaplotype
35Pav-HB-01-3_35Prunus aviumhaplotype
36Pav-HB-01-3_36Prunus aviumhaplotype
37Pav-HB-01-3_37Prunus aviumhaplotype
38Pav-HB-01-3_38Prunus aviumhaplotype
39Pav-HB-01-3_39Prunus aviumhaplotype
40Pav-HB-01-3_40Prunus aviumhaplotype
41Pav-HB-01-3_41Prunus aviumhaplotype
42Pav-HB-01-3_42Prunus aviumhaplotype
43Pav-HB-01-3_43Prunus aviumhaplotype
44Pav-HB-01-3_44Prunus aviumhaplotype
45Pav-HB-01-3_45Prunus aviumhaplotype
46Pav-HB-01-3_46Prunus aviumhaplotype
47Pav-HB-01-3_47Prunus aviumhaplotype
48Pav-HB-01-3_48Prunus aviumhaplotype
49Pav-HB-01-3_49Prunus aviumhaplotype
50Pav-HB-01-3_50Prunus aviumhaplotype
51Pav-HB-01-3_51Prunus aviumhaplotype
52Pav-HB-01-3_52Prunus aviumhaplotype
53Pav-HB-01-3_53Prunus aviumhaplotype
54Pav-HB-01-3_54Prunus aviumhaplotype
55Pav-HB-01-3_55Prunus aviumhaplotype
56Pav-HB-01-3_56Prunus aviumhaplotype
57Pav-HB-01-3_57Prunus aviumhaplotype
58Pav-HB-01-3_58Prunus aviumhaplotype
59Pav-HB-01-3_59Prunus aviumhaplotype
60Pav-HB-01-3_60Prunus aviumhaplotype
61Pav-HB-01-3_61Prunus aviumhaplotype
62Pav-HB-01-3_62Prunus aviumhaplotype
63Pav-HB-01-3_63Prunus aviumhaplotype
64Pav-HB-01-3_64Prunus aviumhaplotype
65Pav-HB-01-3_65Prunus aviumhaplotype
66Pav-HB-01-3_66Prunus aviumhaplotype
67Pav-HB-01-3_67Prunus aviumhaplotype
68Pav-HB-01-3_68Prunus aviumhaplotype
69Pav-HB-01-3_69Prunus aviumhaplotype
70Pav-HB-01-3_70Prunus aviumhaplotype
71Pav-HB-01-3_71Prunus aviumhaplotype
72Pav-HB-01-3_72Prunus aviumhaplotype
73Pav-HB-01-3_73Prunus aviumhaplotype
74Pav-HB-01-3_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015G1N/A14.97Rsweet_1_05962255View
2Prunus-TE-6K cherry SNP-estimate1N/A9.68RosBREED_snp_sweet_cherry_Pp1_05962255View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A26.41RosBREED_snp_sweet_cherry_Pp1_05962255View
4Sweet Cherry-C-F1LG1N/A5.76RosBREED_snp_sweet_cherry_Pp1_05962255View
5Sweet Cherry-VxC-F1LG1N/A21.19RosBREED_snp_sweet_cherry_Pp1_05962255View
6Sweet Cherry-CxC-F2LG1N/A3.17RosBREED_snp_sweet_cherry_Pp1_05962255View
7Sweet Cherry-RG-F1-2014G1N/A15.3RosBREED_snp_sweet_cherry_Pp1_05962255View
8Sweet Cherry-RosBREED-3.8K-20201N/A14.31RosBREED_snp_sweet_cherry_Pp1_05962255View
9Sweet Cherry-RosBREED-1.6K-20191N/A13.53RosBREED_snp_sweet_cherry_Pp1_05962255View
10Sweet Cherry-A-F11N/A34.79RosBREED_snp_sweet_cherry_Pp1_05962255View
11Sweet Cherry-AxS-F11N/A34.79RosBREED_snp_sweet_cherry_Pp1_05962255View
12Sweet Cherry-C-F1-6+9K_array1N/A8.47RosBREED_snp_sweet_cherry_Pp1_05962255View
13Sweet Cherry-VxC-F1-6+9K_array1N/A26.12RosBREED_snp_sweet_cherry_Pp1_05962255View
14Sour Cherry-M172x25-F1LG1N/A13.53RosBREED_snp_sweet_cherry_Pp1_05962255View
15SourCherry-Montx25-F1LG1N/A13.53RosBREED_snp_sweet_cherry_Pp1_05962255View
16SourCherry-25x25-F1LG1N/A13.53RosBREED_snp_sweet_cherry_Pp1_05962255View
17Sour Cherry-US-F1LG1N/A13.53RosBREED_snp_sweet_cherry_Pp1_05962255View
18SourCherry-RE-F1LG1N/A13.53RosBREED_snp_sweet_cherry_Pp1_05962255View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:5962255..5962255. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:6411616..6411616. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:4862953..4862953. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)