RosBREED_snp_sweet_cherry_Pp1_09597368, RosBREED_snp_sweet_cherry_Pp1_09597368 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_09597368
AliasRosBREED_snp_sweet_1_09597368
ss490546174
rs271786435
Rsweet_1_09597368
dbSNP IDss490546174
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_09597368
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_09597368Rsweet_1_09597368Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_09597368RosBREED_snp_sweet_cherry_Pp1_09597368Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_09597368RosBREED_snp_sweet_cherry_Pp1_09597368-29.48Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-7Pav-HB-01-7Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-7_2Prunus aviumhaplotype
3Pav-HB-01-7_3Prunus aviumhaplotype
4Pav-HB-01-7_4Prunus aviumhaplotype
5Pav-HB-01-7_5Prunus aviumhaplotype
6Pav-HB-01-7_6Prunus aviumhaplotype
7Pav-HB-01-7_7Prunus aviumhaplotype
8Pav-HB-01-7_8Prunus aviumhaplotype
9Pav-HB-01-7_9Prunus aviumhaplotype
10Pav-HB-01-7_10Prunus aviumhaplotype
11Pav-HB-01-7_11Prunus aviumhaplotype
12Pav-HB-01-7_12Prunus aviumhaplotype
13Pav-HB-01-7_13Prunus aviumhaplotype
14Pav-HB-01-7_14Prunus aviumhaplotype
15Pav-HB-01-7_15Prunus aviumhaplotype
16Pav-HB-01-7_16Prunus aviumhaplotype
17Pav-HB-01-7_17Prunus aviumhaplotype
18Pav-HB-01-7_18Prunus aviumhaplotype
19Pav-HB-01-7_19Prunus aviumhaplotype
20Pav-HB-01-7_20Prunus aviumhaplotype
21Pav-HB-01-7_21Prunus aviumhaplotype
22Pav-HB-01-7_22Prunus aviumhaplotype
23Pav-HB-01-7_23Prunus aviumhaplotype
24Pav-HB-01-7_24Prunus aviumhaplotype
25Pav-HB-01-7_25Prunus aviumhaplotype
26Pav-HB-01-7_26Prunus aviumhaplotype
27Pav-HB-01-7_27Prunus aviumhaplotype
28Pav-HB-01-7_28Prunus aviumhaplotype
29Pav-HB-01-7_29Prunus aviumhaplotype
30Pav-HB-01-7_30Prunus aviumhaplotype
31Pav-HB-01-7_31Prunus aviumhaplotype
32Pav-HB-01-7_32Prunus aviumhaplotype
33Pav-HB-01-7_33Prunus aviumhaplotype
34Pav-HB-01-7_34Prunus aviumhaplotype
35Pav-HB-01-7_35Prunus aviumhaplotype
36Pav-HB-01-7_36Prunus aviumhaplotype
37Pav-HB-01-7_37Prunus aviumhaplotype
38Pav-HB-01-7_38Prunus aviumhaplotype
39Pav-HB-01-7_39Prunus aviumhaplotype
40Pav-HB-01-7_40Prunus aviumhaplotype
41Pav-HB-01-7_41Prunus aviumhaplotype
42Pav-HB-01-7_42Prunus aviumhaplotype
43Pav-HB-01-7_43Prunus aviumhaplotype
44Pav-HB-01-7_44Prunus aviumhaplotype
45Pav-HB-01-7_45Prunus aviumhaplotype
46Pav-HB-01-7_46Prunus aviumhaplotype
47Pav-HB-01-7_47Prunus aviumhaplotype
48Pav-HB-01-7_48Prunus aviumhaplotype
49Pav-HB-01-7_49Prunus aviumhaplotype
50Pav-HB-01-7_50Prunus aviumhaplotype
51Pav-HB-01-7_51Prunus aviumhaplotype
52Pav-HB-01-7_52Prunus aviumhaplotype
53Pav-HB-01-7_53Prunus aviumhaplotype
54Pav-HB-01-7_54Prunus aviumhaplotype
55Pav-HB-01-7_55Prunus aviumhaplotype
56Pav-HB-01-7_56Prunus aviumhaplotype
57Pav-HB-01-7_57Prunus aviumhaplotype
58Pav-HB-01-7_58Prunus aviumhaplotype
59Pav-HB-01-7_59Prunus aviumhaplotype
60Pav-HB-01-7_60Prunus aviumhaplotype
61Pav-HB-01-7_61Prunus aviumhaplotype
62Pav-HB-01-7_62Prunus aviumhaplotype
63Pav-HB-01-7_63Prunus aviumhaplotype
64Pav-HB-01-7_64Prunus aviumhaplotype
65Pav-HB-01-7_65Prunus aviumhaplotype
66Pav-HB-01-7_66Prunus aviumhaplotype
67Pav-HB-01-7_67Prunus aviumhaplotype
68Pav-HB-01-7_68Prunus aviumhaplotype
69Pav-HB-01-7_69Prunus aviumhaplotype
70Pav-HB-01-7_70Prunus aviumhaplotype
71Pav-HB-01-7_71Prunus aviumhaplotype
72Pav-HB-01-7_72Prunus aviumhaplotype
73Pav-HB-01-7_73Prunus aviumhaplotype
74Pav-HB-01-7_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RG-F1-2015R1N/A22.26Rsweet_1_09597368View
2Sweet Cherry-RL-F1-2015L1N/A17.81Rsweet_1_09597368View
3Prunus-TE-6K cherry SNP-estimate1N/A13.65RosBREED_snp_sweet_cherry_Pp1_09597368View
4sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A44.25RosBREED_snp_sweet_cherry_Pp1_09597368View
5Sweet Cherry-C-F1LG1N/A21.07RosBREED_snp_sweet_cherry_Pp1_09597368View
6Sweet Cherry-VxC-F1LG1N/A38.7RosBREED_snp_sweet_cherry_Pp1_09597368View
7Sweet Cherry-CxC-F2LG1N/A14.84RosBREED_snp_sweet_cherry_Pp1_09597368View
8Sweet Cherry-RG-F1-2014R1N/A27.3RosBREED_snp_sweet_cherry_Pp1_09597368View
9Sweet Cherry-RosBREED-3.8K-20201N/A30.26RosBREED_snp_sweet_cherry_Pp1_09597368View
10Sweet Cherry-RosBREED-1.6K-20191N/A29.48RosBREED_snp_sweet_cherry_Pp1_09597368View
11Sweet Cherry-C-F1-6+9K_array1N/A24.08RosBREED_snp_sweet_cherry_Pp1_09597368View
12Sweet Cherry-VxC-F1-6+9K_array1N/A49.54RosBREED_snp_sweet_cherry_Pp1_09597368View
13Sour Cherry-M172x25-F1LG1N/A29.48RosBREED_snp_sweet_cherry_Pp1_09597368View
14SourCherry-Montx25-F1LG1N/A29.48RosBREED_snp_sweet_cherry_Pp1_09597368View
15SourCherry-25x25-F1LG1N/A29.48RosBREED_snp_sweet_cherry_Pp1_09597368View
16Sour Cherry-US-F1LG1N/A29.48RosBREED_snp_sweet_cherry_Pp1_09597368View
17SourCherry-RE-F1LG1N/A29.48RosBREED_snp_sweet_cherry_Pp1_09597368View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:9597368..9597368. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:10046726..10046726. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr2 chromosome PAV_r1.0chr2:9140433..9140433. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)