RosBREED_snp_sweet_cherry_Pp1_07328678, RosBREED_snp_sweet_cherry_Pp1_07328678 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_07328678
AliasRosBREED_snp_sweet_1_07328678
ss490545963
rs271786384
Rsweet_1_07328678
dbSNP IDss490545963
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_07328678
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
ss490545963ss490545963Prunus aviummarker_locus
Rsweet_1_07328678Rsweet_1_07328678Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_07328678RosBREED_snp_sweet_cherry_Pp1_07328678Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_07328678RosBREED_snp_sweet_cherry_Pp1_07328678-17.78Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-5Pav-HB-01-5Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-5_2Prunus aviumhaplotype
3Pav-HB-01-5_3Prunus aviumhaplotype
4Pav-HB-01-5_4Prunus aviumhaplotype
5Pav-HB-01-5_5Prunus aviumhaplotype
6Pav-HB-01-5_6Prunus aviumhaplotype
7Pav-HB-01-5_7Prunus aviumhaplotype
8Pav-HB-01-5_8Prunus aviumhaplotype
9Pav-HB-01-5_9Prunus aviumhaplotype
10Pav-HB-01-5_10Prunus aviumhaplotype
11Pav-HB-01-5_11Prunus aviumhaplotype
12Pav-HB-01-5_12Prunus aviumhaplotype
13Pav-HB-01-5_13Prunus aviumhaplotype
14Pav-HB-01-5_14Prunus aviumhaplotype
15Pav-HB-01-5_15Prunus aviumhaplotype
16Pav-HB-01-5_16Prunus aviumhaplotype
17Pav-HB-01-5_17Prunus aviumhaplotype
18Pav-HB-01-5_18Prunus aviumhaplotype
19Pav-HB-01-5_19Prunus aviumhaplotype
20Pav-HB-01-5_20Prunus aviumhaplotype
21Pav-HB-01-5_21Prunus aviumhaplotype
22Pav-HB-01-5_22Prunus aviumhaplotype
23Pav-HB-01-5_23Prunus aviumhaplotype
24Pav-HB-01-5_24Prunus aviumhaplotype
25Pav-HB-01-5_25Prunus aviumhaplotype
26Pav-HB-01-5_26Prunus aviumhaplotype
27Pav-HB-01-5_27Prunus aviumhaplotype
28Pav-HB-01-5_28Prunus aviumhaplotype
29Pav-HB-01-5_29Prunus aviumhaplotype
30Pav-HB-01-5_30Prunus aviumhaplotype
31Pav-HB-01-5_31Prunus aviumhaplotype
32Pav-HB-01-5_32Prunus aviumhaplotype
33Pav-HB-01-5_33Prunus aviumhaplotype
34Pav-HB-01-5_34Prunus aviumhaplotype
35Pav-HB-01-5_35Prunus aviumhaplotype
36Pav-HB-01-5_36Prunus aviumhaplotype
37Pav-HB-01-5_37Prunus aviumhaplotype
38Pav-HB-01-5_38Prunus aviumhaplotype
39Pav-HB-01-5_39Prunus aviumhaplotype
40Pav-HB-01-5_40Prunus aviumhaplotype
41Pav-HB-01-5_41Prunus aviumhaplotype
42Pav-HB-01-5_42Prunus aviumhaplotype
43Pav-HB-01-5_43Prunus aviumhaplotype
44Pav-HB-01-5_44Prunus aviumhaplotype
45Pav-HB-01-5_45Prunus aviumhaplotype
46Pav-HB-01-5_46Prunus aviumhaplotype
47Pav-HB-01-5_47Prunus aviumhaplotype
48Pav-HB-01-5_48Prunus aviumhaplotype
49Pav-HB-01-5_49Prunus aviumhaplotype
50Pav-HB-01-5_50Prunus aviumhaplotype
51Pav-HB-01-5_51Prunus aviumhaplotype
52Pav-HB-01-5_52Prunus aviumhaplotype
53Pav-HB-01-5_53Prunus aviumhaplotype
54Pav-HB-01-5_54Prunus aviumhaplotype
55Pav-HB-01-5_55Prunus aviumhaplotype
56Pav-HB-01-5_56Prunus aviumhaplotype
57Pav-HB-01-5_57Prunus aviumhaplotype
58Pav-HB-01-5_58Prunus aviumhaplotype
59Pav-HB-01-5_59Prunus aviumhaplotype
60Pav-HB-01-5_60Prunus aviumhaplotype
61Pav-HB-01-5_61Prunus aviumhaplotype
62Pav-HB-01-5_62Prunus aviumhaplotype
63Pav-HB-01-5_63Prunus aviumhaplotype
64Pav-HB-01-5_64Prunus aviumhaplotype
65Pav-HB-01-5_65Prunus aviumhaplotype
66Pav-HB-01-5_66Prunus aviumhaplotype
67Pav-HB-01-5_67Prunus aviumhaplotype
68Pav-HB-01-5_68Prunus aviumhaplotype
69Pav-HB-01-5_69Prunus aviumhaplotype
70Pav-HB-01-5_70Prunus aviumhaplotype
71Pav-HB-01-5_71Prunus aviumhaplotype
72Pav-HB-01-5_72Prunus aviumhaplotype
73Pav-HB-01-5_73Prunus aviumhaplotype
74Pav-HB-01-5_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-BTK-Black Tartarian-2013LG01N/A25.4ss490545963View
2Sweet Cherry-RL-Lapins-2013LG01N/A15.4ss490545963View
3Sweet Cherry-BTK-F1-2013LG01N/A31.6ss490545963View
4Sweet Cherry-RL-F1-2013LG01N/A17.8ss490545963View
5Sweet Cherry-RL-F1-2015L1N/A13.7Rsweet_1_07328678View
6Prunus-TE-6K cherry SNP-estimate1N/A11.08RosBREED_snp_sweet_cherry_Pp1_07328678View
7sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A33.12RosBREED_snp_sweet_cherry_Pp1_07328678View
8Sweet Cherry-VxC-F1LG1N/A27.49RosBREED_snp_sweet_cherry_Pp1_07328678View
9Sweet Cherry-CxC-F2LG1N/A8.47RosBREED_snp_sweet_cherry_Pp1_07328678View
10Sweet Cherry-BCxBC-F2LG1N/A18.28RosBREED_snp_sweet_cherry_Pp1_07328678View
11Sweet Cherry-RosBREED-3.8K-20201N/A18.56RosBREED_snp_sweet_cherry_Pp1_07328678View
12Sweet Cherry-RosBREED-1.6K-20191N/A17.78RosBREED_snp_sweet_cherry_Pp1_07328678View
13Sweet Cherry-A-F11N/A36.3RosBREED_snp_sweet_cherry_Pp1_07328678View
14Sweet Cherry-AxS-F11N/A36.3RosBREED_snp_sweet_cherry_Pp1_07328678View
15Sweet Cherry-VxC-F1-6+9K_array1N/A31.55RosBREED_snp_sweet_cherry_Pp1_07328678View
16Sour Cherry-M172x25-F1LG1N/A17.78RosBREED_snp_sweet_cherry_Pp1_07328678View
17SourCherry-Montx25-F1LG1N/A17.78RosBREED_snp_sweet_cherry_Pp1_07328678View
18SourCherry-25x25-F1LG1N/A17.78RosBREED_snp_sweet_cherry_Pp1_07328678View
19Sour Cherry-US-F1LG1N/A17.78RosBREED_snp_sweet_cherry_Pp1_07328678View
20SourCherry-RE-F1LG1N/A17.78RosBREED_snp_sweet_cherry_Pp1_07328678View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:7328678..7328678. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:7778041..7778041. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:5706820..5706820. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)