RosBREED_snp_sweet_cherry_Pp1_02115377, RosBREED_snp_sweet_cherry_Pp1_02115377 (genetic_marker) Prunus avium

Marker Overview
NameRosBREED_snp_sweet_cherry_Pp1_02115377
AliasRosBREED_snp_sweet_1_02115377
ss490545528
rs271786262
Rsweet_1_02115377
dbSNP IDss490545528
SNP Array ID
IRSC 6K SNP array for cherry:RosBREED_snp_sweet_cherry_Pp1_02115377
TypeSNP
SNP AllelesT/C
SpeciesPrunus avium
Publication[view all]
Libraries
Library NameType
IRSC 6K SNP array for cherrySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
Rsweet_1_02115377Rsweet_1_02115377Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_02115377RosBREED_snp_sweet_cherry_Pp1_02115377Prunus aviummarker_locus
ss490545528ss490545528Prunus aviummarker_locus
RosBREED_snp_sweet_cherry_Pp1_02115377RosBREED_snp_sweet_cherry_Pp1_02115377-8.38Prunus aviummarker_locus


The following haplotype_block feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
Pav-HB-01-2Pav-HB-01-2Prunus aviumhaplotype_block


The following haplotype feature(s) contains this genetic_marker:

Feature NameUnique NameSpeciesType
2Pav-HB-01-2_2Prunus aviumhaplotype
3Pav-HB-01-2_3Prunus aviumhaplotype
4Pav-HB-01-2_4Prunus aviumhaplotype
5Pav-HB-01-2_5Prunus aviumhaplotype
6Pav-HB-01-2_6Prunus aviumhaplotype
7Pav-HB-01-2_7Prunus aviumhaplotype
8Pav-HB-01-2_8Prunus aviumhaplotype
9Pav-HB-01-2_9Prunus aviumhaplotype
10Pav-HB-01-2_10Prunus aviumhaplotype
11Pav-HB-01-2_11Prunus aviumhaplotype
12Pav-HB-01-2_12Prunus aviumhaplotype
13Pav-HB-01-2_13Prunus aviumhaplotype
14Pav-HB-01-2_14Prunus aviumhaplotype
15Pav-HB-01-2_15Prunus aviumhaplotype
16Pav-HB-01-2_16Prunus aviumhaplotype
17Pav-HB-01-2_17Prunus aviumhaplotype
18Pav-HB-01-2_18Prunus aviumhaplotype
19Pav-HB-01-2_19Prunus aviumhaplotype
20Pav-HB-01-2_20Prunus aviumhaplotype
21Pav-HB-01-2_21Prunus aviumhaplotype
22Pav-HB-01-2_22Prunus aviumhaplotype
23Pav-HB-01-2_23Prunus aviumhaplotype
24Pav-HB-01-2_24Prunus aviumhaplotype
25Pav-HB-01-2_25Prunus aviumhaplotype
26Pav-HB-01-2_26Prunus aviumhaplotype
27Pav-HB-01-2_27Prunus aviumhaplotype
28Pav-HB-01-2_28Prunus aviumhaplotype
29Pav-HB-01-2_29Prunus aviumhaplotype
30Pav-HB-01-2_30Prunus aviumhaplotype
31Pav-HB-01-2_31Prunus aviumhaplotype
32Pav-HB-01-2_32Prunus aviumhaplotype
33Pav-HB-01-2_33Prunus aviumhaplotype
34Pav-HB-01-2_34Prunus aviumhaplotype
35Pav-HB-01-2_35Prunus aviumhaplotype
36Pav-HB-01-2_36Prunus aviumhaplotype
37Pav-HB-01-2_37Prunus aviumhaplotype
38Pav-HB-01-2_38Prunus aviumhaplotype
39Pav-HB-01-2_39Prunus aviumhaplotype
40Pav-HB-01-2_40Prunus aviumhaplotype
41Pav-HB-01-2_41Prunus aviumhaplotype
42Pav-HB-01-2_42Prunus aviumhaplotype
43Pav-HB-01-2_43Prunus aviumhaplotype
44Pav-HB-01-2_44Prunus aviumhaplotype
45Pav-HB-01-2_45Prunus aviumhaplotype
46Pav-HB-01-2_46Prunus aviumhaplotype
47Pav-HB-01-2_47Prunus aviumhaplotype
48Pav-HB-01-2_48Prunus aviumhaplotype
49Pav-HB-01-2_49Prunus aviumhaplotype
50Pav-HB-01-2_50Prunus aviumhaplotype
51Pav-HB-01-2_51Prunus aviumhaplotype
52Pav-HB-01-2_52Prunus aviumhaplotype
53Pav-HB-01-2_53Prunus aviumhaplotype
54Pav-HB-01-2_54Prunus aviumhaplotype
55Pav-HB-01-2_55Prunus aviumhaplotype
56Pav-HB-01-2_56Prunus aviumhaplotype
57Pav-HB-01-2_57Prunus aviumhaplotype
58Pav-HB-01-2_58Prunus aviumhaplotype
59Pav-HB-01-2_59Prunus aviumhaplotype
60Pav-HB-01-2_60Prunus aviumhaplotype
61Pav-HB-01-2_61Prunus aviumhaplotype
62Pav-HB-01-2_62Prunus aviumhaplotype
63Pav-HB-01-2_63Prunus aviumhaplotype
64Pav-HB-01-2_64Prunus aviumhaplotype
65Pav-HB-01-2_65Prunus aviumhaplotype
66Pav-HB-01-2_66Prunus aviumhaplotype
67Pav-HB-01-2_67Prunus aviumhaplotype
68Pav-HB-01-2_68Prunus aviumhaplotype
69Pav-HB-01-2_69Prunus aviumhaplotype
70Pav-HB-01-2_70Prunus aviumhaplotype
71Pav-HB-01-2_71Prunus aviumhaplotype
72Pav-HB-01-2_72Prunus aviumhaplotype
73Pav-HB-01-2_73Prunus aviumhaplotype
74Pav-HB-01-2_74Prunus aviumhaplotype


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a12016-11-21
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RL-F1-2015L1N/A4.34Rsweet_1_02115377View
2Prunus-TE-6K cherry SNP-estimate1N/A3.8RosBREED_snp_sweet_cherry_Pp1_02115377View
3sweet cherry-consensus-map-2012-6K cherry SNP-estimate1N/A7.54RosBREED_snp_sweet_cherry_Pp1_02115377View
4Sweet Cherry-V-F1LG1N/A5.06RosBREED_snp_sweet_cherry_Pp1_02115377View
5Sweet Cherry-VxC-F1LG1N/A5.15RosBREED_snp_sweet_cherry_Pp1_02115377View
6Sweet Cherry-V-F1-6+9K_array1N/A5.12RosBREED_snp_sweet_cherry_Pp1_02115377View
7Sweet Cherry-RosBREED-3.8K-20201N/A9.16RosBREED_snp_sweet_cherry_Pp1_02115377View
8Sweet Cherry-RosBREED-1.6K-20191N/A8.38RosBREED_snp_sweet_cherry_Pp1_02115377View
9Sweet Cherry-A-F11N/A10.08RosBREED_snp_sweet_cherry_Pp1_02115377View
10Sweet Cherry-AxS-F11N/A10.08RosBREED_snp_sweet_cherry_Pp1_02115377View
11Sweet Cherry-VxC-F1-6+9K_array1N/A9.3RosBREED_snp_sweet_cherry_Pp1_02115377View
12Sweet Cherry-RL-Lapins-2013LG01N/A6ss490545528View
13Sweet Cherry-RL-F1-2013LG01N/A8.4ss490545528View
14SourCherry-Montx25-F1LG1N/A8.38RosBREED_snp_sweet_cherry_Pp1_02115377View
15SourCherry-RE-F1LG1N/A8.38RosBREED_snp_sweet_cherry_Pp1_02115377View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:2115377..2115377. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:2115235..2115235. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:2194304..2194304. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)