Prunus Mandshurica CH264_4 Whole Genome v1.0 Assembly & Annotation
Homology of the Prunus mandshurica CH264_4 genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-9 was used for the NCBI nr (Release 2018-05) and 1e-6 for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2019-01), and UniProtKB/TrEMBL (Release 2019-01) databases. The best hit reports are available for download in Excel format.
Functional annotation for the Prunus mandshurica CH264_4 Genome v1.0 are available for download below. The Prunus mandshurica CH264_4 Genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Transcript alignments were performed by the GDR Team of Main Bioinformatics Lab at WSU. The alignment tool 'BLAT' was used to map transcripts to the fragaria salicina genome assembly. Alignments with an alignment length of 97% and 97% identify were preserved. The available files are in GFF3 format.