MDP0000809337, MDP0000809337 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000809337
Unique Name	MDP0000809337
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1752

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr11	chromosome	chr11:25863922..25865673 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC015719.248	contig	MDC015719.248:431..2182 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000809337_exon_1	MDP0000809337_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000809337	MDP0000809337	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 213..582 score: 2.4e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 187..564 score: 65
None	No IPR available	SEG	seg	seg	coord: 47..61 score
None	No IPR available	SEG	seg	seg	coord: 60..67 score
None	No IPR available	SEG	seg	seg	coord: 35..50 score
None	No IPR available	SEG	seg	seg	coord: 33..38 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:25863922..25865673+
mRNA from alignment at MDC015719.248:431..2182+
coding sequence from alignment at MDC015719.248:431..2182+

mRNA sequence

>MDP0000809337 ID=MDP0000809337; Name=MDP0000809337; organism=Malus x domestica; type=mRNA; length=1752bp
ATGGACCAGCATGTTGGATTTGGTGCGACCGGTGCAGGATTGTCATATAC
AGCTCCACTTCCCGCTGTTCCATCTTTACGGAAAAGGTTACTTGGGTCGT
TGAAATTTGATACCAGGAACTCACCAAATTCACCCTTTTTGACTCACTTT
GATTCTGACTCTCTTACAACACTGAGCGACAGTCAGGAGCAGCGCAGCTC
CTCCGAGAATCTCTCAGAAGCCACCCCCTCCTGTACCTCTTCATTTGAAA
CAAACAGTTACGTCCATCAGTTAAGCTTAAGCCCTTCGGTGGACTGTAGT
CGAGACGGTCTGCAGGTCTATTCTGGTAGCACTTCTGCCTTAAAGGATGC
AAATAGTAGCCAGAATATAAAACAAACTTTGCAAGAATTAGAGAGTGCTT
TAATGGGGCCTGACGATGAGGAAGAAGAAGTCACCACACCAAACGCTTCT
ATTGGAGAAAGTGGCAGGAGGCAGATGCAGAGGTCCATGTCATGGATCCA
GAAGCACCAGGTTTCACAACCAGTTCAACGCCAGGCATCCTTTGTTTCTA
GGCAAAGGCAGTCGGGTGAAGTTCAGATTGAGAAACGTCATAAAGTGATA
GATGATGCATCTCTAAAGGGTTTGCCAGCAGGTAATCTGAAGCAATTGCT
GATTGCATGTGCTGAAGCTCTCTCCAACAACGACATGGATAGTTTTGAAA
AGTTGATTGAAAAGGCTAGAGGAGCTGTATCTATCAGTGGAGAACCAATC
CRGCGACTTGGAGCTTACTTGGTAGAAGGGCTGATAGCAAGGAAGGAGAT
ATCGGGTGCCAATATTTACCATGCCCTTAGGTGTAGAGAGCCTGAGAGCA
ACGAATTGCTGTCCTACATGCAGATTCTGTATGAGATATGCCCATACTTA
AAGTTTGGTTACTTGGCAGCCAATGGGGCCATTGCTGAGGCATGCAGAAA
TGAGGACCGCATCCACATTATAGACTTCCAGATTGCTCAGGGAAGTCAGT
GGGTCACTCTCCTTCAAGCACTTGCAGCAAGACCCGGTGGGGCTCCCCAT
GTACGAATTACAGGTATCGATGATCCTCTTTCTAAACATGCCCGTGGTGA
TGGGTTGGAGGCAGTAGGGAGACGGTTGAAAGCCATCTCTGACAAATTTA
ACATCCCAGTTGAATTTCATGGAGTTCCAGTATTCTCACCCAATGTCACA
CTGGACATGCTTGATGTCAGGCCCGGAGAGGCTCTTGCTGTGAACTTCCC
TCTGGAGCTTCATCACACACCAGATGAGAGCGTTGTTGAGAACAATCCAA
GGGATGGGCTGCTGAGAACAGTGAAGTCTCTGAATCCAAAGGTAACCACT
TTGGTGGAGCAAGAATCAAATACAAACACAACCCCTTTCTTCAATAGGTT
TGTGGAAGCTCTTGAATACTACATGGCGATGTTCGAGTCTATTGATGTGG
CCCTGCCAAGGAGCAGCAAGGAGAGAATCAATGTGGAGCAGCATTGCTTG
GCAAGAGATATTGTGAATGTCATTGCTTGCGAGGGGAGGGAGAGGGTGGA
ACGCCACGAGCTCTTTGGCAAGTGGAAGTCCAGGTTTACAATGGCAGGGT
TTCGGCAATACCCGTTGAGCTCATATGTAAACTCTGTCATTAAGAGTCTG
CTGAGGTGTTACTCGGAGCATTATACACTGGTGGAGAGGGACGGCGCTAT
GCTCTTGGGATGGAAGGACAGGAACCTAGTATCGGCTTCTGCCTGGCACT
GA

protein sequence of MDP0000809337

>MDP0000809337 ID=MDP0000809337; Name=MDP0000809337; organism=Malus x domestica; type=polypeptide; length=584bp
MDQHVGFGATGAGLSYTAPLPAVPSLRKRLLGSLKFDTRNSPNSPFLTHF
DSDSLTTLSDSQEQRSSSENLSEATPSCTSSFETNSYVHQLSLSPSVDCS
RDGLQVYSGSTSALKDANSSQNIKQTLQELESALMGPDDEEEEVTTPNAS
IGESGRRQMQRSMSWIQKHQVSQPVQRQASFVSRQRQSGEVQIEKRHKVI
DDASLKGLPAGNLKQLLIACAEALSNNDMDSFEKLIEKARGAVSISGEPI
XRLGAYLVEGLIARKEISGANIYHALRCREPESNELLSYMQILYEICPYL
KFGYLAANGAIAEACRNEDRIHIIDFQIAQGSQWVTLLQALAARPGGAPH
VRITGIDDPLSKHARGDGLEAVGRRLKAISDKFNIPVEFHGVPVFSPNVT
LDMLDVRPGEALAVNFPLELHHTPDESVVENNPRDGLLRTVKSLNPKVTT
LVEQESNTNTTPFFNRFVEALEYYMAMFESIDVALPRSSKERINVEQHCL
ARDIVNVIACEGRERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIKSL
LRCYSEHYTLVERDGAMLLGWKDRNLVSASAWH*

mRNA from alignment at chr11:25863922..25865673+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000809337 ID=MDP0000809337; Name=MDP0000809337; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr11:25863922..25865673+ (Malus x domestica

mRNA from alignment at MDC015719.248:431..2182+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000809337 ID=MDP0000809337; Name=MDP0000809337; organism=Malus x domestica; type=mRNA; length=1752bp; location=Sequence derived from: MDC015719.248:431..2182+ (Malus x domestica
ATGGACCAGCATGTTGGATTTGGTGCGACCGGTGCAGGATTGTCATATAC
AGCTCCACTTCCCGCTGTTCCATCTTTACGGAAAAGGTTACTTGGGTCGT
TGAAATTTGATACCAGGAACTCACCAAATTCACCCTTTTTGACTCACTTT
GATTCTGACTCTCTTACAACACTGAGCGACAGTCAGGAGCAGCGCAGCTC
CTCCGAGAATCTCTCAGAAGCCACCCCCTCCTGTACCTCTTCATTTGAAA
CAAACAGTTACGTCCATCAGTTAAGCTTAAGCCCTTCGGTGGACTGTAGT
CGAGACGGTCTGCAGGTCTATTCTGGTAGCACTTCTGCCTTAAAGGATGC
AAATAGTAGCCAGAATATAAAACAAACTTTGCAAGAATTAGAGAGTGCTT
TAATGGGGCCTGACGATGAGGAAGAAGAAGTCACCACACCAAACGCTTCT
ATTGGAGAAAGTGGCAGGAGGCAGATGCAGAGGTCCATGTCATGGATCCA
GAAGCACCAGGTTTCACAACCAGTTCAACGCCAGGCATCCTTTGTTTCTA
GGCAAAGGCAGTCGGGTGAAGTTCAGATTGAGAAACGTCATAAAGTGATA
GATGATGCATCTCTAAAGGGTTTGCCAGCAGGTAATCTGAAGCAATTGCT
GATTGCATGTGCTGAAGCTCTCTCCAACAACGACATGGATAGTTTTGAAA
AGTTGATTGAAAAGGCTAGAGGAGCTGTATCTATCAGTGGAGAACCAATC
CRGCGACTTGGAGCTTACTTGGTAGAAGGGCTGATAGCAAGGAAGGAGAT
ATCGGGTGCCAATATTTACCATGCCCTTAGGTGTAGAGAGCCTGAGAGCA
ACGAATTGCTGTCCTACATGCAGATTCTGTATGAGATATGCCCATACTTA
AAGTTTGGTTACTTGGCAGCCAATGGGGCCATTGCTGAGGCATGCAGAAA
TGAGGACCGCATCCACATTATAGACTTCCAGATTGCTCAGGGAAGTCAGT
GGGTCACTCTCCTTCAAGCACTTGCAGCAAGACCCGGTGGGGCTCCCCAT
GTACGAATTACAGGTATCGATGATCCTCTTTCTAAACATGCCCGTGGTGA
TGGGTTGGAGGCAGTAGGGAGACGGTTGAAAGCCATCTCTGACAAATTTA
ACATCCCAGTTGAATTTCATGGAGTTCCAGTATTCTCACCCAATGTCACA
CTGGACATGCTTGATGTCAGGCCCGGAGAGGCTCTTGCTGTGAACTTCCC
TCTGGAGCTTCATCACACACCAGATGAGAGCGTTGTTGAGAACAATCCAA
GGGATGGGCTGCTGAGAACAGTGAAGTCTCTGAATCCAAAGGTAACCACT
TTGGTGGAGCAAGAATCAAATACAAACACAACCCCTTTCTTCAATAGGTT
TGTGGAAGCTCTTGAATACTACATGGCGATGTTCGAGTCTATTGATGTGG
CCCTGCCAAGGAGCAGCAAGGAGAGAATCAATGTGGAGCAGCATTGCTTG
GCAAGAGATATTGTGAATGTCATTGCTTGCGAGGGGAGGGAGAGGGTGGA
ACGCCACGAGCTCTTTGGCAAGTGGAAGTCCAGGTTTACAATGGCAGGGT
TTCGGCAATACCCGTTGAGCTCATATGTAAACTCTGTCATTAAGAGTCTG
CTGAGGTGTTACTCGGAGCATTATACACTGGTGGAGAGGGACGGCGCTAT
GCTCTTGGGATGGAAGGACAGGAACCTAGTATCGGCTTCTGCCTGGCACT
GA

Coding sequence (CDS) from alignment at MDC015719.248:431..2182+

>MDP0000809337 ID=MDP0000809337; Name=MDP0000809337; organism=Malus x domestica; type=CDS; length=1752bp; location=Sequence derived from: MDC015719.248:431..2182+ (Malus x domestica
ATGGACCAGCATGTTGGATTTGGTGCGACCGGTGCAGGATTGTCATATAC
AGCTCCACTTCCCGCTGTTCCATCTTTACGGAAAAGGTTACTTGGGTCGT
TGAAATTTGATACCAGGAACTCACCAAATTCACCCTTTTTGACTCACTTT
GATTCTGACTCTCTTACAACACTGAGCGACAGTCAGGAGCAGCGCAGCTC
CTCCGAGAATCTCTCAGAAGCCACCCCCTCCTGTACCTCTTCATTTGAAA
CAAACAGTTACGTCCATCAGTTAAGCTTAAGCCCTTCGGTGGACTGTAGT
CGAGACGGTCTGCAGGTCTATTCTGGTAGCACTTCTGCCTTAAAGGATGC
AAATAGTAGCCAGAATATAAAACAAACTTTGCAAGAATTAGAGAGTGCTT
TAATGGGGCCTGACGATGAGGAAGAAGAAGTCACCACACCAAACGCTTCT
ATTGGAGAAAGTGGCAGGAGGCAGATGCAGAGGTCCATGTCATGGATCCA
GAAGCACCAGGTTTCACAACCAGTTCAACGCCAGGCATCCTTTGTTTCTA
GGCAAAGGCAGTCGGGTGAAGTTCAGATTGAGAAACGTCATAAAGTGATA
GATGATGCATCTCTAAAGGGTTTGCCAGCAGGTAATCTGAAGCAATTGCT
GATTGCATGTGCTGAAGCTCTCTCCAACAACGACATGGATAGTTTTGAAA
AGTTGATTGAAAAGGCTAGAGGAGCTGTATCTATCAGTGGAGAACCAATC
CRGCGACTTGGAGCTTACTTGGTAGAAGGGCTGATAGCAAGGAAGGAGAT
ATCGGGTGCCAATATTTACCATGCCCTTAGGTGTAGAGAGCCTGAGAGCA
ACGAATTGCTGTCCTACATGCAGATTCTGTATGAGATATGCCCATACTTA
AAGTTTGGTTACTTGGCAGCCAATGGGGCCATTGCTGAGGCATGCAGAAA
TGAGGACCGCATCCACATTATAGACTTCCAGATTGCTCAGGGAAGTCAGT
GGGTCACTCTCCTTCAAGCACTTGCAGCAAGACCCGGTGGGGCTCCCCAT
GTACGAATTACAGGTATCGATGATCCTCTTTCTAAACATGCCCGTGGTGA
TGGGTTGGAGGCAGTAGGGAGACGGTTGAAAGCCATCTCTGACAAATTTA
ACATCCCAGTTGAATTTCATGGAGTTCCAGTATTCTCACCCAATGTCACA
CTGGACATGCTTGATGTCAGGCCCGGAGAGGCTCTTGCTGTGAACTTCCC
TCTGGAGCTTCATCACACACCAGATGAGAGCGTTGTTGAGAACAATCCAA
GGGATGGGCTGCTGAGAACAGTGAAGTCTCTGAATCCAAAGGTAACCACT
TTGGTGGAGCAAGAATCAAATACAAACACAACCCCTTTCTTCAATAGGTT
TGTGGAAGCTCTTGAATACTACATGGCGATGTTCGAGTCTATTGATGTGG
CCCTGCCAAGGAGCAGCAAGGAGAGAATCAATGTGGAGCAGCATTGCTTG
GCAAGAGATATTGTGAATGTCATTGCTTGCGAGGGGAGGGAGAGGGTGGA
ACGCCACGAGCTCTTTGGCAAGTGGAAGTCCAGGTTTACAATGGCAGGGT
TTCGGCAATACCCGTTGAGCTCATATGTAAACTCTGTCATTAAGAGTCTG
CTGAGGTGTTACTCGGAGCATTATACACTGGTGGAGAGGGACGGCGCTAT
GCTCTTGGGATGGAAGGACAGGAACCTAGTATCGGCTTCTGCCTGGCACT
GA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS