MDP0000804652, MDP0000804652 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000804652
Unique Name	MDP0000804652
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1662

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr9	chromosome	chr9:8891282..8892943 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC002626.191	contig	MDC002626.191:18680..20341 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000804652_exon_1	MDP0000804652_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000804652	MDP0000804652	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 177..547 score: 1.7e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 151..528 score: 69
None	No IPR available	SEG	seg	seg	coord: 75..79 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:8891282..8892943-
mRNA from alignment at MDC002626.191:18680..20341-
coding sequence from alignment at MDC002626.191:18680..20341-

mRNA sequence

>MDP0000804652 ID=MDP0000804652; Name=MDP0000804652; organism=Malus x domestica; type=mRNA; length=1662bp
ATGCAAGCATCAAAGGAGCAGAGAATTTCAGGGATGTCAAACCAGTTATA
TTATCAGCCAATCCAAGAAGTAGAGGCCTACTGCTTGCCTCGTTTCCAAA
CTTTGGACCCGCGGCTACATTACAATGAGAGCAGCCAAAGTACCCACCTC
CCATTGCAGAGTTTCCATGAACACTACTGCACTTTGGAGTCTTCCTGGTC
TAATGGTAGCTACACCGTTTATAACACCCCATCAAATGTCAGTTTCTCAC
CTAGTGGAAGCCCGATGTCACAGCAAGACTCTCATTCGTATCTGTCTGAT
CAGTACCATTCCCCTGACCAGACCTACAGCTCTCCGATGAGTGGATCCTG
CATAACCGATGATGCAACTGACTTAAAGTACAAGCTGAAACAATTAGAAA
CTGTAATGCTGGGTCCTGATTCCAATRTTCTTGATAACTATTGCAYTACT
TTCCCGAATGGGGCGAGCAATTCCCTGCCAGACGAGGACAGCTGGGGACA
GATTATGGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCT
GTGCAAAAGCAGTAGCAGATAATGATCTGTTAATGGCACAATGGATGATG
GATGAGTTACGCCAGATGGTTTCAGTTTCGGGTGAACCAATTCAGAGGTT
GGGTGCATACTTGCTGGAAGGACTAGTTGCGCGGAAGGCATCTTCGGGGA
GTAACATCTACAAAGCACTGAGATGCAAAGAACCAGCGAGTTGCGAACTC
CTTTCTTACATGCATATTCTCTATGAGGTTTGCCCTTACTTCAAATTCGG
GTACATGTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGATGAGGACA
GTGTTCACATCATTGATTTCCAAATMGGTCAGGGGAGTCAGTGGGTCACT
CTAATCCAAGCTTTTGCATCCAGGCCTGGTGGACCACCCCACATCCGTAT
AACAGGTATTGACGATTCCATGTCAGCTTATGCCCGTGGAGGAGGACTAA
ACATTGTGGGAAAGAGGTTGTCTAAGCTTGCAGAGTTGGTCAAGGTTCCA
TTCGAGTTCCATGCCACTTCCATGTCTGGTTGTGACGTACAGCTGGAGCA
TCTTTGTGTTCGACCTGGGGAGGCTTTGGCTATCAACTTTGCGTTCATGC
TGCACCACATGCCCGATGAGAGCGTCAGCACTCAGAATCACCGGGATAGG
CTGTTGAGGTTGGTTAAGAGCTTGTCTCCRAAAGTRGTGACCCTCGTTGA
GCAAGAATCTAACACAAACACTGCTGCATTCTATCCACGCTTTGTAGAAA
CACTAAATTACTACACAGCTATGTTCGAGTCAATTGATGTGACTCTTCCG
AGAGATCACAAGGAGCGGATCAATGTGGAGCAACACTGCTTGGCTAGGGA
GGTTGTTAACATAATAGCATGCGAGGGCGTTGAGAGGGTGGAAAGACACG
AGCTTCTTGGAAAGTGGAGGTTGCGGTTTGCAATGGCTGGATTTACACCG
TACCCTTTAAGCTCCTTGGTAAATGCCACCATCAAGACGCTGCTGGATAA
CTACTCTGACAAATATCGGCTTGAAGAGCGAGATGGGGCACTCTATCTTG
GCTGGAAGAACAGAGACTTGGTTGCTTCTTGTGCATGGAGGTGCAAACCG
AGCACGAATTGA

protein sequence of MDP0000804652

>MDP0000804652 ID=MDP0000804652; Name=MDP0000804652; organism=Malus x domestica; type=polypeptide; length=554bp
MQASKEQRISGMSNQLYYQPIQEVEAYCLPRFQTLDPRLHYNESSQSTHL
PLQSFHEHYCTLESSWSNGSYTVYNTPSNVSFSPSGSPMSQQDSHSYLSD
QYHSPDQTYSSPMSGSCITDDATDLKYKLKQLETVMLGPDSNXLDNYCXT
FPNGASNSLPDEDSWGQIMESISKKDLKQVLIFCAKAVADNDLLMAQWMM
DELRQMVSVSGEPIQRLGAYLLEGLVARKASSGSNIYKALRCKEPASCEL
LSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDSVHIIDFQIGQGSQWVT
LIQAFASRPGGPPHIRITGIDDSMSAYARGGGLNIVGKRLSKLAELVKVP
FEFHATSMSGCDVQLEHLCVRPGEALAINFAFMLHHMPDESVSTQNHRDR
LLRLVKSLSPKVVTLVEQESNTNTAAFYPRFVETLNYYTAMFESIDVTLP
RDHKERINVEQHCLAREVVNIIACEGVERVERHELLGKWRLRFAMAGFTP
YPLSSLVNATIKTLLDNYSDKYRLEERDGALYLGWKNRDLVASCAWRCKP
STN*

mRNA from alignment at chr9:8891282..8892943-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000804652 ID=MDP0000804652; Name=MDP0000804652; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:8891282..8892943- (Malus x domestica

mRNA from alignment at MDC002626.191:18680..20341-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000804652 ID=MDP0000804652; Name=MDP0000804652; organism=Malus x domestica; type=mRNA; length=1662bp; location=Sequence derived from: MDC002626.191:18680..20341- (Malus x domestica
ATGCAAGCATCAAAGGAGCAGAGAATTTCAGGGATGTCAAACCAGTTATA
TTATCAGCCAATCCAAGAAGTAGAGGCCTACTGCTTGCCTCGTTTCCAAA
CTTTGGACCCGCGGCTACATTACAATGAGAGCAGCCAAAGTACCCACCTC
CCATTGCAGAGTTTCCATGAACACTACTGCACTTTGGAGTCTTCCTGGTC
TAATGGTAGCTACACCGTTTATAACACCCCATCAAATGTCAGTTTCTCAC
CTAGTGGAAGCCCGATGTCACAGCAAGACTCTCATTCGTATCTGTCTGAT
CAGTACCATTCCCCTGACCAGACCTACAGCTCTCCGATGAGTGGATCCTG
CATAACCGATGATGCAACTGACTTAAAGTACAAGCTGAAACAATTAGAAA
CTGTAATGCTGGGTCCTGATTCCAATRTTCTTGATAACTATTGCAYTACT
TTCCCGAATGGGGCGAGCAATTCCCTGCCAGACGAGGACAGCTGGGGACA
GATTATGGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCT
GTGCAAAAGCAGTAGCAGATAATGATCTGTTAATGGCACAATGGATGATG
GATGAGTTACGCCAGATGGTTTCAGTTTCGGGTGAACCAATTCAGAGGTT
GGGTGCATACTTGCTGGAAGGACTAGTTGCGCGGAAGGCATCTTCGGGGA
GTAACATCTACAAAGCACTGAGATGCAAAGAACCAGCGAGTTGCGAACTC
CTTTCTTACATGCATATTCTCTATGAGGTTTGCCCTTACTTCAAATTCGG
GTACATGTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGATGAGGACA
GTGTTCACATCATTGATTTCCAAATMGGTCAGGGGAGTCAGTGGGTCACT
CTAATCCAAGCTTTTGCATCCAGGCCTGGTGGACCACCCCACATCCGTAT
AACAGGTATTGACGATTCCATGTCAGCTTATGCCCGTGGAGGAGGACTAA
ACATTGTGGGAAAGAGGTTGTCTAAGCTTGCAGAGTTGGTCAAGGTTCCA
TTCGAGTTCCATGCCACTTCCATGTCTGGTTGTGACGTACAGCTGGAGCA
TCTTTGTGTTCGACCTGGGGAGGCTTTGGCTATCAACTTTGCGTTCATGC
TGCACCACATGCCCGATGAGAGCGTCAGCACTCAGAATCACCGGGATAGG
CTGTTGAGGTTGGTTAAGAGCTTGTCTCCRAAAGTRGTGACCCTCGTTGA
GCAAGAATCTAACACAAACACTGCTGCATTCTATCCACGCTTTGTAGAAA
CACTAAATTACTACACAGCTATGTTCGAGTCAATTGATGTGACTCTTCCG
AGAGATCACAAGGAGCGGATCAATGTGGAGCAACACTGCTTGGCTAGGGA
GGTTGTTAACATAATAGCATGCGAGGGCGTTGAGAGGGTGGAAAGACACG
AGCTTCTTGGAAAGTGGAGGTTGCGGTTTGCAATGGCTGGATTTACACCG
TACCCTTTAAGCTCCTTGGTAAATGCCACCATCAAGACGCTGCTGGATAA
CTACTCTGACAAATATCGGCTTGAAGAGCGAGATGGGGCACTCTATCTTG
GCTGGAAGAACAGAGACTTGGTTGCTTCTTGTGCATGGAGGTGCAAACCG
AGCACGAATTGA

Coding sequence (CDS) from alignment at MDC002626.191:18680..20341-

>MDP0000804652 ID=MDP0000804652; Name=MDP0000804652; organism=Malus x domestica; type=CDS; length=1662bp; location=Sequence derived from: MDC002626.191:18680..20341- (Malus x domestica
ATGCAAGCATCAAAGGAGCAGAGAATTTCAGGGATGTCAAACCAGTTATA
TTATCAGCCAATCCAAGAAGTAGAGGCCTACTGCTTGCCTCGTTTCCAAA
CTTTGGACCCGCGGCTACATTACAATGAGAGCAGCCAAAGTACCCACCTC
CCATTGCAGAGTTTCCATGAACACTACTGCACTTTGGAGTCTTCCTGGTC
TAATGGTAGCTACACCGTTTATAACACCCCATCAAATGTCAGTTTCTCAC
CTAGTGGAAGCCCGATGTCACAGCAAGACTCTCATTCGTATCTGTCTGAT
CAGTACCATTCCCCTGACCAGACCTACAGCTCTCCGATGAGTGGATCCTG
CATAACCGATGATGCAACTGACTTAAAGTACAAGCTGAAACAATTAGAAA
CTGTAATGCTGGGTCCTGATTCCAATRTTCTTGATAACTATTGCAYTACT
TTCCCGAATGGGGCGAGCAATTCCCTGCCAGACGAGGACAGCTGGGGACA
GATTATGGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCT
GTGCAAAAGCAGTAGCAGATAATGATCTGTTAATGGCACAATGGATGATG
GATGAGTTACGCCAGATGGTTTCAGTTTCGGGTGAACCAATTCAGAGGTT
GGGTGCATACTTGCTGGAAGGACTAGTTGCGCGGAAGGCATCTTCGGGGA
GTAACATCTACAAAGCACTGAGATGCAAAGAACCAGCGAGTTGCGAACTC
CTTTCTTACATGCATATTCTCTATGAGGTTTGCCCTTACTTCAAATTCGG
GTACATGTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGATGAGGACA
GTGTTCACATCATTGATTTCCAAATMGGTCAGGGGAGTCAGTGGGTCACT
CTAATCCAAGCTTTTGCATCCAGGCCTGGTGGACCACCCCACATCCGTAT
AACAGGTATTGACGATTCCATGTCAGCTTATGCCCGTGGAGGAGGACTAA
ACATTGTGGGAAAGAGGTTGTCTAAGCTTGCAGAGTTGGTCAAGGTTCCA
TTCGAGTTCCATGCCACTTCCATGTCTGGTTGTGACGTACAGCTGGAGCA
TCTTTGTGTTCGACCTGGGGAGGCTTTGGCTATCAACTTTGCGTTCATGC
TGCACCACATGCCCGATGAGAGCGTCAGCACTCAGAATCACCGGGATAGG
CTGTTGAGGTTGGTTAAGAGCTTGTCTCCRAAAGTRGTGACCCTCGTTGA
GCAAGAATCTAACACAAACACTGCTGCATTCTATCCACGCTTTGTAGAAA
CACTAAATTACTACACAGCTATGTTCGAGTCAATTGATGTGACTCTTCCG
AGAGATCACAAGGAGCGGATCAATGTGGAGCAACACTGCTTGGCTAGGGA
GGTTGTTAACATAATAGCATGCGAGGGCGTTGAGAGGGTGGAAAGACACG
AGCTTCTTGGAAAGTGGAGGTTGCGGTTTGCAATGGCTGGATTTACACCG
TACCCTTTAAGCTCCTTGGTAAATGCCACCATCAAGACGCTGCTGGATAA
CTACTCTGACAAATATCGGCTTGAAGAGCGAGATGGGGCACTCTATCTTG
GCTGGAAGAACAGAGACTTGGTTGCTTCTTGTGCATGGAGGTGCAAACCG
AGCACGAATTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS