MDP0000669451, MDP0000669451 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000669451
Unique Name	MDP0000669451
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1755

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr17	chromosome	chr17:22659094..22660848 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC021259.144	contig	MDC021259.144:16122..17876 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000669451_exon_1	MDP0000669451_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000669451	MDP0000669451	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 218..578 score: 7.8e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 192..557 score: 68
IPR021914	Transcriptional factor DELLA, N-terminal	PFAM	PF12041	DELLA	coord: 52..121 score: 1.7
None	No IPR available	COIL	coil	coiled-coil	coord: 67..88 score
None	No IPR available	SEG	seg	seg	coord: 133..144 score: NAcoord: 186..200 score
None	No IPR available	SEG	seg	seg	coord: 33..50 score: NAcoord: 59..73 score
None	No IPR available	SEG	seg	seg	coord: 8..24 score
None	No IPR available	SEG	seg	seg	coord: 16..27 score
None	No IPR available	SEG	seg	seg	coord: 12..24 score
None	No IPR available	SEG	seg	seg	coord: 3..24 score
None	No IPR available	SEG	seg	seg	coord: 7..20 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:22659094..22660848-
mRNA from alignment at MDC021259.144:16122..17876-
coding sequence from alignment at MDC021259.144:16122..17876-

mRNA sequence

>MDP0000669451 ID=MDP0000669451; Name=MDP0000669451; organism=Malus x domestica; type=mRNA; length=1755bp
ATGAAGAGAGATCACCGCGATAGCCGTGCAACTGTAACTGCACGTCAAAA
CAATTCCAAACCGGAATACTCATCACCGCCGTCTTCCGCCCTGAACGGCA
AGGCCAAGATTTGGGAAGATGACCAAGACGGGTACAGCGCCGGCGGCGAC
ATGGATGAGCTGCTTGCCGTTTTGGGGTACAAGGTTCGGTCCGACGACAT
GGCCGACGTGGCGGAGAAGCTCGAGCAGCTCGAAATGGTCATGGGGTCGG
CTCAGGAAGATGGGATTTCTCAGCTCTCTGACACCGTCCACTACAACCCG
TCGGATCTCTCCGGGTGGGTCCAGAGCATGCTCTCTGAGCTCAACACCGG
CGACGATATGCCCTCAATCGACGACCCTCTTCTCGCTCCGGCTGAGTCCT
CGTCGATAACCTCGATGAGCTTCTCCAATTCCCAGCGGAGTCGAGTTTTC
AGCGACGATTCCGAATACGATCTCAGGGCTATTCCGGGCGTGGCGGCGTA
CCCGCCAGCTTATTCGCCGTCGGATTCCGAGAGTACGARAAAGCGATTGA
AGACCTCAATTGGGTCCGATTCTAATGGGTCTAGTTCCGSCGCTGTATCC
GATCCGACTCGGCCTCGGGTCCTGGTTGACTCGCAAGAAACCGGYGTGCG
GCTCGTCCACACACTCATGGCCTGTGCAGAGGCTGTCCAGCAGGAAAATT
TGAAGCTTGCAGACGCGCTTGTAAAGCACGTGGGCCTACTCGCGGCTTCC
CAAACCGGCGCTATGAGAAAAGTSGCCACGTACTTCGCTGAAGCTCTGGC
TCGTCGGATTTACCGAATTTACCCTCAGGATTGCCTCGATTCTTCCTACT
CGGACATCCTCGAGATGCACTTTTACGAGACCTGCCCTTATCTGAAATTT
GCTCACTTCACTGCCAACCAGGCAATACTCGAGGCTTTTGCCACCGCGAG
CAGAGTACACGTCATCGATTTCGGGCTTAAACAGGGGATGCAATGGCCAG
CGCTCATGCAGGCGCTGGCACTCAGGCCTGGTGGGCCACCTGCGTTTCGC
CTGACGGGTATTGGCCCGCCGCAGCCCGACAACACTGACGCCTTGCAGCA
GGTAGGATGGAAGTTGGCCCAACTGGCGGAAACTATCGGGGTYGAGTTTG
AATTCCGAGGCTTCGTCGCCAGTAGTCTGGCGGACCTCACGCCGTCTATG
CTCGACATCCGCCCGTCAGAGGGCGAGGTTGTGGCGGTGAATTCGGTTTT
CGAGCTTCACCGCCTCTTGGCTCGACCCGGGGCGGTAGATAAAGTGTTGT
CATCAATCAAGGCCATGAAGCCTAAGATYGTGACAATTGTGGAGCAGGAG
GCGAACCATAACGGGCCGGTTTTCCTGGACCGGTTCACGGAGGCATTGCA
TTATTATTCAAACTTGTTTGATTCGCTGGAGGGATCATCGGGGCCGAGTC
AAGATTTGGTCATGTCCGAGGTGTATTTGGGCAGGCAGATATGCAACGTG
ATGGCATGTGAAGGTGGCGACCGAGTCGAGCGACACGAGACGCTGAGTCA
GTGGCGAGGCCGGATGGACTCGGCCGGGTTCGACCCGGTCCACCTYGGCT
CGAACGCGTTCAAGCAGGCTAGCATGCTGCTRGCTCTTTTCGCCGGCGGA
GATGGGTATCGGGTGGAGGAGAACAATGGGTCTCTCATGCTTGGGTGGCA
CACCCGGCCGCTCATAGCCACCTCGGCTTGGCAGCTGGCGAGCGCAACCG
AGTGA

protein sequence of MDP0000669451

>MDP0000669451 ID=MDP0000669451; Name=MDP0000669451; organism=Malus x domestica; type=polypeptide; length=585bp
MKRDHRDSRATVTARQNNSKPEYSSPPSSALNGKAKIWEDDQDGYSAGGD
MDELLAVLGYKVRSDDMADVAEKLEQLEMVMGSAQEDGISQLSDTVHYNP
SDLSGWVQSMLSELNTGDDMPSIDDPLLAPAESSSITSMSFSNSQRSRVF
SDDSEYDLRAIPGVAAYPPAYSPSDSESTXKRLKTSIGSDSNGSSSXAVS
DPTRPRVLVDSQETGVRLVHTLMACAEAVQQENLKLADALVKHVGLLAAS
QTGAMRKVATYFAEALARRIYRIYPQDCLDSSYSDILEMHFYETCPYLKF
AHFTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFR
LTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVASSLADLTPSM
LDIRPSEGEVVAVNSVFELHRLLARPGAVDKVLSSIKAMKPKIVTIVEQE
ANHNGPVFLDRFTEALHYYSNLFDSLEGSSGPSQDLVMSEVYLGRQICNV
MACEGGDRVERHETLSQWRGRMDSAGFDPVHLGSNAFKQASMLLALFAGG
DGYRVEENNGSLMLGWHTRPLIATSAWQLASATE*

mRNA from alignment at chr17:22659094..22660848-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000669451 ID=MDP0000669451; Name=MDP0000669451; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr17:22659094..22660848- (Malus x domestica

mRNA from alignment at MDC021259.144:16122..17876-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000669451 ID=MDP0000669451; Name=MDP0000669451; organism=Malus x domestica; type=mRNA; length=1755bp; location=Sequence derived from: MDC021259.144:16122..17876- (Malus x domestica
ATGAAGAGAGATCACCGCGATAGCCGTGCAACTGTAACTGCACGTCAAAA
CAATTCCAAACCGGAATACTCATCACCGCCGTCTTCCGCCCTGAACGGCA
AGGCCAAGATTTGGGAAGATGACCAAGACGGGTACAGCGCCGGCGGCGAC
ATGGATGAGCTGCTTGCCGTTTTGGGGTACAAGGTTCGGTCCGACGACAT
GGCCGACGTGGCGGAGAAGCTCGAGCAGCTCGAAATGGTCATGGGGTCGG
CTCAGGAAGATGGGATTTCTCAGCTCTCTGACACCGTCCACTACAACCCG
TCGGATCTCTCCGGGTGGGTCCAGAGCATGCTCTCTGAGCTCAACACCGG
CGACGATATGCCCTCAATCGACGACCCTCTTCTCGCTCCGGCTGAGTCCT
CGTCGATAACCTCGATGAGCTTCTCCAATTCCCAGCGGAGTCGAGTTTTC
AGCGACGATTCCGAATACGATCTCAGGGCTATTCCGGGCGTGGCGGCGTA
CCCGCCAGCTTATTCGCCGTCGGATTCCGAGAGTACGARAAAGCGATTGA
AGACCTCAATTGGGTCCGATTCTAATGGGTCTAGTTCCGSCGCTGTATCC
GATCCGACTCGGCCTCGGGTCCTGGTTGACTCGCAAGAAACCGGYGTGCG
GCTCGTCCACACACTCATGGCCTGTGCAGAGGCTGTCCAGCAGGAAAATT
TGAAGCTTGCAGACGCGCTTGTAAAGCACGTGGGCCTACTCGCGGCTTCC
CAAACCGGCGCTATGAGAAAAGTSGCCACGTACTTCGCTGAAGCTCTGGC
TCGTCGGATTTACCGAATTTACCCTCAGGATTGCCTCGATTCTTCCTACT
CGGACATCCTCGAGATGCACTTTTACGAGACCTGCCCTTATCTGAAATTT
GCTCACTTCACTGCCAACCAGGCAATACTCGAGGCTTTTGCCACCGCGAG
CAGAGTACACGTCATCGATTTCGGGCTTAAACAGGGGATGCAATGGCCAG
CGCTCATGCAGGCGCTGGCACTCAGGCCTGGTGGGCCACCTGCGTTTCGC
CTGACGGGTATTGGCCCGCCGCAGCCCGACAACACTGACGCCTTGCAGCA
GGTAGGATGGAAGTTGGCCCAACTGGCGGAAACTATCGGGGTYGAGTTTG
AATTCCGAGGCTTCGTCGCCAGTAGTCTGGCGGACCTCACGCCGTCTATG
CTCGACATCCGCCCGTCAGAGGGCGAGGTTGTGGCGGTGAATTCGGTTTT
CGAGCTTCACCGCCTCTTGGCTCGACCCGGGGCGGTAGATAAAGTGTTGT
CATCAATCAAGGCCATGAAGCCTAAGATYGTGACAATTGTGGAGCAGGAG
GCGAACCATAACGGGCCGGTTTTCCTGGACCGGTTCACGGAGGCATTGCA
TTATTATTCAAACTTGTTTGATTCGCTGGAGGGATCATCGGGGCCGAGTC
AAGATTTGGTCATGTCCGAGGTGTATTTGGGCAGGCAGATATGCAACGTG
ATGGCATGTGAAGGTGGCGACCGAGTCGAGCGACACGAGACGCTGAGTCA
GTGGCGAGGCCGGATGGACTCGGCCGGGTTCGACCCGGTCCACCTYGGCT
CGAACGCGTTCAAGCAGGCTAGCATGCTGCTRGCTCTTTTCGCCGGCGGA
GATGGGTATCGGGTGGAGGAGAACAATGGGTCTCTCATGCTTGGGTGGCA
CACCCGGCCGCTCATAGCCACCTCGGCTTGGCAGCTGGCGAGCGCAACCG
AGTGA

Coding sequence (CDS) from alignment at MDC021259.144:16122..17876-

>MDP0000669451 ID=MDP0000669451; Name=MDP0000669451; organism=Malus x domestica; type=CDS; length=1755bp; location=Sequence derived from: MDC021259.144:16122..17876- (Malus x domestica
ATGAAGAGAGATCACCGCGATAGCCGTGCAACTGTAACTGCACGTCAAAA
CAATTCCAAACCGGAATACTCATCACCGCCGTCTTCCGCCCTGAACGGCA
AGGCCAAGATTTGGGAAGATGACCAAGACGGGTACAGCGCCGGCGGCGAC
ATGGATGAGCTGCTTGCCGTTTTGGGGTACAAGGTTCGGTCCGACGACAT
GGCCGACGTGGCGGAGAAGCTCGAGCAGCTCGAAATGGTCATGGGGTCGG
CTCAGGAAGATGGGATTTCTCAGCTCTCTGACACCGTCCACTACAACCCG
TCGGATCTCTCCGGGTGGGTCCAGAGCATGCTCTCTGAGCTCAACACCGG
CGACGATATGCCCTCAATCGACGACCCTCTTCTCGCTCCGGCTGAGTCCT
CGTCGATAACCTCGATGAGCTTCTCCAATTCCCAGCGGAGTCGAGTTTTC
AGCGACGATTCCGAATACGATCTCAGGGCTATTCCGGGCGTGGCGGCGTA
CCCGCCAGCTTATTCGCCGTCGGATTCCGAGAGTACGARAAAGCGATTGA
AGACCTCAATTGGGTCCGATTCTAATGGGTCTAGTTCCGSCGCTGTATCC
GATCCGACTCGGCCTCGGGTCCTGGTTGACTCGCAAGAAACCGGYGTGCG
GCTCGTCCACACACTCATGGCCTGTGCAGAGGCTGTCCAGCAGGAAAATT
TGAAGCTTGCAGACGCGCTTGTAAAGCACGTGGGCCTACTCGCGGCTTCC
CAAACCGGCGCTATGAGAAAAGTSGCCACGTACTTCGCTGAAGCTCTGGC
TCGTCGGATTTACCGAATTTACCCTCAGGATTGCCTCGATTCTTCCTACT
CGGACATCCTCGAGATGCACTTTTACGAGACCTGCCCTTATCTGAAATTT
GCTCACTTCACTGCCAACCAGGCAATACTCGAGGCTTTTGCCACCGCGAG
CAGAGTACACGTCATCGATTTCGGGCTTAAACAGGGGATGCAATGGCCAG
CGCTCATGCAGGCGCTGGCACTCAGGCCTGGTGGGCCACCTGCGTTTCGC
CTGACGGGTATTGGCCCGCCGCAGCCCGACAACACTGACGCCTTGCAGCA
GGTAGGATGGAAGTTGGCCCAACTGGCGGAAACTATCGGGGTYGAGTTTG
AATTCCGAGGCTTCGTCGCCAGTAGTCTGGCGGACCTCACGCCGTCTATG
CTCGACATCCGCCCGTCAGAGGGCGAGGTTGTGGCGGTGAATTCGGTTTT
CGAGCTTCACCGCCTCTTGGCTCGACCCGGGGCGGTAGATAAAGTGTTGT
CATCAATCAAGGCCATGAAGCCTAAGATYGTGACAATTGTGGAGCAGGAG
GCGAACCATAACGGGCCGGTTTTCCTGGACCGGTTCACGGAGGCATTGCA
TTATTATTCAAACTTGTTTGATTCGCTGGAGGGATCATCGGGGCCGAGTC
AAGATTTGGTCATGTCCGAGGTGTATTTGGGCAGGCAGATATGCAACGTG
ATGGCATGTGAAGGTGGCGACCGAGTCGAGCGACACGAGACGCTGAGTCA
GTGGCGAGGCCGGATGGACTCGGCCGGGTTCGACCCGGTCCACCTYGGCT
CGAACGCGTTCAAGCAGGCTAGCATGCTGCTRGCTCTTTTCGCCGGCGGA
GATGGGTATCGGGTGGAGGAGAACAATGGGTCTCTCATGCTTGGGTGGCA
CACCCGGCCGCTCATAGCCACCTCGGCTTGGCAGCTGGCGAGCGCAACCG
AGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS
IPR021914	TF_DELLA_N