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Transcript Overview
| Name | MDP0000662303 |
|---|
| Unique Name | MDP0000662303 |
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| Type | mRNA |
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| Organism | Malus x domestica (Apple) |
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| Sequence length | 1644 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| MDP0000662303_exon_1 | MDP0000662303_exon_1 | Malus x domestica | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| MDP0000662303 | MDP0000662303 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR005202 | Transcription factor GRAS | PFAM | PF03514 | GRAS | coord: 157..521
score: 2.4e |
| IPR005202 | Transcription factor GRAS | PROFILE | PS50985 | GRAS | coord: 131..501
score: 64 |
| IPR021914 | Transcriptional factor DELLA, N-terminal | PFAM | PF12041 | DELLA | coord: 32..100
score: 1.4 |
| None | No IPR available | SEG | seg | seg | coord: 5..23
score: NAcoord: 281..300
score: NAcoord: 531..547
score |
| None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 1..12
score: 3.3e-10coord: 12..28
score: 3.3e-10coord: 64..89
score: 3.3 |
| None | No IPR available | SEG | seg | seg | coord: 6..29
score: NAcoord: 59..123
score: NAcoord: 129..148
score |
| None | No IPR available | SEG | seg | seg | coord: 8..49
score: NAcoord: 69..81
score |
| None | No IPR available | SEG | seg | seg | coord: 4..18
score: NAcoord: 28..58
score: NAcoord: 85..98
score |
| None | No IPR available | SEG | seg | seg | coord: 2..35
score: NAcoord: 41..56
score |
| None | No IPR available | SEG | seg | seg | coord: 3..12
score: NAcoord: 29..41
score: NAcoord: 54..64
score: NAcoord: 102..113
score: NAcoord: 122..126
score: NAcoord: 131..145
score |
| None | No IPR available | SEG | seg | seg | coord: 3..10
score: NAcoord: 75..88
score: NAcoord: 127..142
score |
| None | No IPR available | SEG | seg | seg | coord: 1..13
score: NAcoord: 33..44
score |
| None | No IPR available | SEG | seg | seg | coord: 51..65
score: NAcoord: 69..114
score: NAcoord: 144..167
score |
| None | No IPR available | SEG | seg | seg | coord: 31..52
score |
| None | No IPR available | SEG | seg | seg | coord: 122..132
score |
| None | No IPR available | SEG | seg | seg | coord: 55..66
score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000662303 ID=MDP0000662303; Name=MDP0000662303; organism=Malus x domestica; type=mRNA; length=1644bp
ATGGGGCCGTACGGTTCCACCACCTGCTCCGGCGCCAGCAGCAGCGCCAG
CTCCTCCTCCTCCTCCTCCGTCACCAAACCCCCCGCCGACATCGATGGCT
GTTTGGCCGATGCCGGATACAAGGTCCGCTCCTCTGATCTGCGACACGTC
GCCCAGCGCCTCGAGCGGCTTGAGACCGTCATGGTCAACTCCCCCGGCGA
CCTCTCCCACCTCGCCTCCGACGCCGTCCTTTACAACCCCGCCGACCTCG
CCACCTGGGTCGACTCCCTCCTCACCGAGTTCAACCACCAACCCCTCATC
TCTCTCCCCTCCGATCTCGACTTCTCCGAAGGCGCCGTCATCAATAATCC
CGCCGCCCTCCCCCGCCAAACATGGACCGATAATTCCGCCGTCATCGCCG
CCGTGCCGCAGCAGAACCACAACCAGCTCACCGTCGTCACCGCCATGGAA
GAAGATTCGGGGATTAGGCTGGTCCACTTGCTTGTCACGTGCGCCGAATC
CGTCCAGCGTGGTGACCTAGCATTGGCCGGCTCCCTGATCGAGAACATGC
AGGCTCTGTTGACACGTGTCAACCCCAGCTGTGGCATCGGGAAGGTCGCC
GGGTACTTCATCGACGCCCTCAGCTGCCGAATCTTCTCGCCGCAGACCGT
CGGCTCGGCTTCCGGCTCGGTTCACGAGAATGAGCTTCTCTACCACTACT
TCTACGAGGCCTGCCCCTATCTCAAATTCGCGCACTTCACCGCCAATCAG
GCCATCCTGGAAGCATTCGACGGTCACGACTGCGTCCACGTCATCGACTT
CAACTTAATGCACGGCCTCCAATGGCCCGCGCTTATTCAGGCCCTCGCCC
TCCGCCCCGGTGGGCCCCCCCTGCTTCGATTGACCGGCATTGGACCGCCG
TCCCCGGACGGGCGCGACTCGCTGAGAGAAATCGGCCTCCGACTCGCCGA
GTTGGCCCGGTCCGTCAACGTCCGCTTCRCTTTCCGCGGCGTGGCGGCTT
CGAGGCTSGAGGACGTRAAGCCGTGGATGCTCCAGGTGAGTCCCAAGGAG
GCGGTGGCGGTGAATTCTATCATGCAGCTGCACCGGCTGCTCGGATCCGA
CCCGAACCGGAACTCCCCAATCGAGATGATGCTGTCCTGGATCCGGAACC
TCAACCCGAAGATCGTGGCGGTTGTGGAGCAGGAAGCGGACCATAACAAA
CCGGGTTTTCTGGACCGGTTCACGGAGGCGCTGTACTACTACTCGAACAT
GTTCGACTCGCTGGAGGCTTGCGCGATGCAGCCGGAGAAGGCTTTGGCGG
AGATTTACATACAGAGGGAGATATGCAACGTTGTGTGCTGCGAGGGAGCG
GCTCGAGTCGAGAGGCACGAACCGCTGGACAAGTGGCGGATCCGGCTCGA
GCAAGCCGGGTTCAGGCCGCTCCACTTGGGATCGAATGCGTTTAAGCAGG
CGAGTATGCTTCTTACTCTCTTCTCGGCTGAAGGGTACCGCGTGGAGGAG
AACCAAGGCTGCCTCACTCTCGGTTGGCACAACCGCCCTCTCATCGCGGC
TTCGGCCTGGCAAGTGATGCCTATGGCCGAAGCCACGGCAAACCAACAAS
CGGTYGGAATTATTAATCAGAATAATAATCCCAATCGWATCTAA back to topprotein sequence of MDP0000662303 >MDP0000662303 ID=MDP0000662303; Name=MDP0000662303; organism=Malus x domestica; type=polypeptide; length=548bp
MGPYGSTTCSGASSSASSSSSSSVTKPPADIDGCLADAGYKVRSSDLRHV
AQRLERLETVMVNSPGDLSHLASDAVLYNPADLATWVDSLLTEFNHQPLI
SLPSDLDFSEGAVINNPAALPRQTWTDNSAVIAAVPQQNHNQLTVVTAME
EDSGIRLVHLLVTCAESVQRGDLALAGSLIENMQALLTRVNPSCGIGKVA
GYFIDALSCRIFSPQTVGSASGSVHENELLYHYFYEACPYLKFAHFTANQ
AILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPP
SPDGRDSLREIGLRLAELARSVNVRFXFRGVAASRLEDVKPWMLQVSPKE
AVAVNSIMQLHRLLGSDPNRNSPIEMMLSWIRNLNPKIVAVVEQEADHNK
PGFLDRFTEALYYYSNMFDSLEACAMQPEKALAEIYIQREICNVVCCEGA
ARVERHEPLDKWRIRLEQAGFRPLHLGSNAFKQASMLLTLFSAEGYRVEE
NQGCLTLGWHNRPLIAASAWQVMPMAEATANQQXVGIINQNNNPNRI* back to topmRNA from alignment at chr15:11412854..11414497- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000662303 ID=MDP0000662303; Name=MDP0000662303; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:11412854..11414497- (Malus x domestica
back to topmRNA from alignment at MDC007874.329:20233..21876- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000662303 ID=MDP0000662303; Name=MDP0000662303; organism=Malus x domestica; type=mRNA; length=1644bp; location=Sequence derived from: MDC007874.329:20233..21876- (Malus x domestica
ATGGGGCCGTACGGTTCCACCACCTGCTCCGGCGCCAGCAGCAGCGCCAG
CTCCTCCTCCTCCTCCTCCGTCACCAAACCCCCCGCCGACATCGATGGCT
GTTTGGCCGATGCCGGATACAAGGTCCGCTCCTCTGATCTGCGACACGTC
GCCCAGCGCCTCGAGCGGCTTGAGACCGTCATGGTCAACTCCCCCGGCGA
CCTCTCCCACCTCGCCTCCGACGCCGTCCTTTACAACCCCGCCGACCTCG
CCACCTGGGTCGACTCCCTCCTCACCGAGTTCAACCACCAACCCCTCATC
TCTCTCCCCTCCGATCTCGACTTCTCCGAAGGCGCCGTCATCAATAATCC
CGCCGCCCTCCCCCGCCAAACATGGACCGATAATTCCGCCGTCATCGCCG
CCGTGCCGCAGCAGAACCACAACCAGCTCACCGTCGTCACCGCCATGGAA
GAAGATTCGGGGATTAGGCTGGTCCACTTGCTTGTCACGTGCGCCGAATC
CGTCCAGCGTGGTGACCTAGCATTGGCCGGCTCCCTGATCGAGAACATGC
AGGCTCTGTTGACACGTGTCAACCCCAGCTGTGGCATCGGGAAGGTCGCC
GGGTACTTCATCGACGCCCTCAGCTGCCGAATCTTCTCGCCGCAGACCGT
CGGCTCGGCTTCCGGCTCGGTTCACGAGAATGAGCTTCTCTACCACTACT
TCTACGAGGCCTGCCCCTATCTCAAATTCGCGCACTTCACCGCCAATCAG
GCCATCCTGGAAGCATTCGACGGTCACGACTGCGTCCACGTCATCGACTT
CAACTTAATGCACGGCCTCCAATGGCCCGCGCTTATTCAGGCCCTCGCCC
TCCGCCCCGGTGGGCCCCCCCTGCTTCGATTGACCGGCATTGGACCGCCG
TCCCCGGACGGGCGCGACTCGCTGAGAGAAATCGGCCTCCGACTCGCCGA
GTTGGCCCGGTCCGTCAACGTCCGCTTCRCTTTCCGCGGCGTGGCGGCTT
CGAGGCTSGAGGACGTRAAGCCGTGGATGCTCCAGGTGAGTCCCAAGGAG
GCGGTGGCGGTGAATTCTATCATGCAGCTGCACCGGCTGCTCGGATCCGA
CCCGAACCGGAACTCCCCAATCGAGATGATGCTGTCCTGGATCCGGAACC
TCAACCCGAAGATCGTGGCGGTTGTGGAGCAGGAAGCGGACCATAACAAA
CCGGGTTTTCTGGACCGGTTCACGGAGGCGCTGTACTACTACTCGAACAT
GTTCGACTCGCTGGAGGCTTGCGCGATGCAGCCGGAGAAGGCTTTGGCGG
AGATTTACATACAGAGGGAGATATGCAACGTTGTGTGCTGCGAGGGAGCG
GCTCGAGTCGAGAGGCACGAACCGCTGGACAAGTGGCGGATCCGGCTCGA
GCAAGCCGGGTTCAGGCCGCTCCACTTGGGATCGAATGCGTTTAAGCAGG
CGAGTATGCTTCTTACTCTCTTCTCGGCTGAAGGGTACCGCGTGGAGGAG
AACCAAGGCTGCCTCACTCTCGGTTGGCACAACCGCCCTCTCATCGCGGC
TTCGGCCTGGCAAGTGATGCCTATGGCCGAAGCCACGGCAAACCAACAAS
CGGTYGGAATTATTAATCAGAATAATAATCCCAATCGWATCTAA back to topCoding sequence (CDS) from alignment at MDC007874.329:20233..21876- >MDP0000662303 ID=MDP0000662303; Name=MDP0000662303; organism=Malus x domestica; type=CDS; length=1644bp; location=Sequence derived from: MDC007874.329:20233..21876- (Malus x domestica
ATGGGGCCGTACGGTTCCACCACCTGCTCCGGCGCCAGCAGCAGCGCCAG
CTCCTCCTCCTCCTCCTCCGTCACCAAACCCCCCGCCGACATCGATGGCT
GTTTGGCCGATGCCGGATACAAGGTCCGCTCCTCTGATCTGCGACACGTC
GCCCAGCGCCTCGAGCGGCTTGAGACCGTCATGGTCAACTCCCCCGGCGA
CCTCTCCCACCTCGCCTCCGACGCCGTCCTTTACAACCCCGCCGACCTCG
CCACCTGGGTCGACTCCCTCCTCACCGAGTTCAACCACCAACCCCTCATC
TCTCTCCCCTCCGATCTCGACTTCTCCGAAGGCGCCGTCATCAATAATCC
CGCCGCCCTCCCCCGCCAAACATGGACCGATAATTCCGCCGTCATCGCCG
CCGTGCCGCAGCAGAACCACAACCAGCTCACCGTCGTCACCGCCATGGAA
GAAGATTCGGGGATTAGGCTGGTCCACTTGCTTGTCACGTGCGCCGAATC
CGTCCAGCGTGGTGACCTAGCATTGGCCGGCTCCCTGATCGAGAACATGC
AGGCTCTGTTGACACGTGTCAACCCCAGCTGTGGCATCGGGAAGGTCGCC
GGGTACTTCATCGACGCCCTCAGCTGCCGAATCTTCTCGCCGCAGACCGT
CGGCTCGGCTTCCGGCTCGGTTCACGAGAATGAGCTTCTCTACCACTACT
TCTACGAGGCCTGCCCCTATCTCAAATTCGCGCACTTCACCGCCAATCAG
GCCATCCTGGAAGCATTCGACGGTCACGACTGCGTCCACGTCATCGACTT
CAACTTAATGCACGGCCTCCAATGGCCCGCGCTTATTCAGGCCCTCGCCC
TCCGCCCCGGTGGGCCCCCCCTGCTTCGATTGACCGGCATTGGACCGCCG
TCCCCGGACGGGCGCGACTCGCTGAGAGAAATCGGCCTCCGACTCGCCGA
GTTGGCCCGGTCCGTCAACGTCCGCTTCRCTTTCCGCGGCGTGGCGGCTT
CGAGGCTSGAGGACGTRAAGCCGTGGATGCTCCAGGTGAGTCCCAAGGAG
GCGGTGGCGGTGAATTCTATCATGCAGCTGCACCGGCTGCTCGGATCCGA
CCCGAACCGGAACTCCCCAATCGAGATGATGCTGTCCTGGATCCGGAACC
TCAACCCGAAGATCGTGGCGGTTGTGGAGCAGGAAGCGGACCATAACAAA
CCGGGTTTTCTGGACCGGTTCACGGAGGCGCTGTACTACTACTCGAACAT
GTTCGACTCGCTGGAGGCTTGCGCGATGCAGCCGGAGAAGGCTTTGGCGG
AGATTTACATACAGAGGGAGATATGCAACGTTGTGTGCTGCGAGGGAGCG
GCTCGAGTCGAGAGGCACGAACCGCTGGACAAGTGGCGGATCCGGCTCGA
GCAAGCCGGGTTCAGGCCGCTCCACTTGGGATCGAATGCGTTTAAGCAGG
CGAGTATGCTTCTTACTCTCTTCTCGGCTGAAGGGTACCGCGTGGAGGAG
AACCAAGGCTGCCTCACTCTCGGTTGGCACAACCGCCCTCTCATCGCGGC
TTCGGCCTGGCAAGTGATGCCTATGGCCGAAGCCACGGCAAACCAACAAS
CGGTYGGAATTATTAATCAGAATAATAATCCCAATCGWATCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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