MDP0000441376, MDP0000441376 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000441376
Unique Name	MDP0000441376
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3225

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr9	chromosome	chr9:562753..565977 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC017689.144	contig	MDC017689.144:6358..9582 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000441376_exon_1	MDP0000441376_exon_1	Malus x domestica	CDS
MDP0000441376_exon_2	MDP0000441376_exon_2	Malus x domestica	CDS

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 331..695 score: 4.4e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 305..675 score: 66
None	No IPR available	SEG	seg	seg	coord: 17..36 score: NAcoord: 204..214 score: NAcoord: 240..251 score: NAcoord: 280..306 score: NAcoord: 329..336 score: NAcoord: 376..389 score: NAcoord: 391..404 score
None	No IPR available	SEG	seg	seg	coord: 15..29 score: NAcoord: 70..86 score
None	No IPR available	SEG	seg	seg	coord: 12..31 score: NAcoord: 32..48 score
None	No IPR available	SEG	seg	seg	coord: 27..32 score
None	No IPR available	SEG	seg	seg	coord: 28..38 score
None	No IPR available	SEG	seg	seg	coord: 18..41 score: NAcoord: 54..68 score
None	No IPR available	SEG	seg	seg	coord: 26..37 score
None	No IPR available	SEG	seg	seg	coord: 42..69 score
None	No IPR available	SEG	seg	seg	coord: 28..39 score
None	No IPR available	SEG	seg	seg	coord: 4..22 score: NAcoord: 38..48 score
None	No IPR available	SEG	seg	seg	coord: 28..42 score
None	No IPR available	SEG	seg	seg	coord: 16..32 score
None	No IPR available	SEG	seg	seg	coord: 9..37 score
None	No IPR available	SEG	seg	seg	coord: 24..37 score
None	No IPR available	SEG	seg	seg	coord: 15..30 score
None	No IPR available	SEG	seg	seg	coord: 42..48 score

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at chr9:562753..565977-
mRNA from alignment at MDC017689.144:6358..9582-
coding sequence from alignment at MDC017689.144:6358..9582-

mRNA sequence

>MDP0000441376 ID=MDP0000441376; Name=MDP0000441376; organism=Malus x domestica; type=mRNA; length=3225bp
ATGGGGTCTATCAAGAGTGAGAACTCATGCAGCTCCGACCTCARACCCCC
GTCTCCGACTGAATCCACGACGATGTCTATGTCCATATCAGAATCTAAGA
AAATCACAATTCCTCCATCCTCAGAGTTGGATCAGCAGAGCACCCTAACT
CCGCCGAGCCTCAACTTTCCAACGCTCAAGTTCGAGCTAGACGATGTTGA
AGTCCAATCTCCCGACCATTCCATCTGGGAGTCTTTGTTCTCCGAGCAAT
TCGAAACCGATTTTATGATCTTGTCGCCCGTCCCAAACAACATGCCGAAC
TCTCCCCAAAACGGTGGTTCTGCAACTCATCAGAATTACAATTACAATTA
CGCTCAGTCCATGCAAGGGCAGAGCCTCTCGGGCTGCTCTTCCCCTAGGT
TTTCGCCGCACCTCGGAGCATTCAGCAGCACCCATAACCCTAAAGGCAAA
GGACTCAGCCCGCTCCGTAGGGTTTTCAACTCTCCTGTTAACCAGTACAT
GGAGCCGGCTGATCAGAACACGCAGTCACTCCCTGTTCCTGTTTCCATCG
AAGACTTCTTGGACGATTATGAACGTGACGGATTCATAKCCGCATTCCCA
ACAACAGCATCGTCCAAGATATCAGGAAGCTCGTCACAGTCTTACAATCA
TCACGATCACTTGCCAGCATCATCGACAGTTCCATCCGCCACGTTGGACT
GCATGCCGATGWATAACTCTTCGAGGTTTAGTAGATCGGCGAGTGAAGCG
TCGTTGGTTACGGCTGGTAATTCTCAGCTGACACAAGAGAGAAGCAGCGG
TAGCGGTTATCAGCAGATGAGCGGCGCGCCACTTTCACAACAATTGCAAC
AAGAACGCATGCAAGAGAAGCAGCAACAGCCGCAAAAACAACACCACCAC
CAACCCCAACAACAACAGAACCTTCATTATAATATGATGGCGCCTGCTAT
CCCTATGGCACATGAGCAGGTGAATTTTTGTATCTTAATCATTTAAATTT
TGTACGTGCATACATCTTACTTAATTGAACGATGTAAACAAGAAGATACA
TTATCGGTAAGGGCAGTGCGAKAAATTTTTCATTGTGAYGGAAACATGAG
TGGTAYATCACGTGTTATTATATAARTGGTAGAAAGTTTAATTTTTTAAG
TTACATATTCCACTATTTGTATAGTGACAYGTGGTGTACGATCCCGTRTT
YCAGTMATATTGAAAAATTTCTCGRATAATGCTAGGRAGACTAGATTTGT
AGACAAAATTTTGGAAATTAAAGGACATRAAAGTTGATGATTKGYTTATT
AYTTAAGYRTTRATAAACGTGTTYATTCCTATTAGTGACCCATCATTTAA
TTTGCAAATTTTATTTTCAAATTTATCTCYCTARCATTATCCTATGGGTA
ATMTTTGACTATGCATATTGATCAAAGTATTAGGATAATCTTTGACTATG
CATATTGACCAACAGAATACTTTGATTAGAATTTAGGGTCACTAATATTT
TTGTAAATTATATAATGTGKATAGTTGAATTTATTTTTTTAATTATTAAA
GAAAAAATTCAACTTTCAATTRCTACATCATCATGTGGCCCACAATAYAT
AGTCTAAATATATGATCTCTCYGGTAGCACTCTTATCAAATTTGAGGCCG
ACTTCATTTGTTTATTTTTAACAAGRTATACTATGACTCTATGAGATAWA
ATGTGTACGAGTCGGTCAACACATTTGATGACACCTATTATTGTTGGAGA
AGCTTTTGATTAYGATTTGTTATATTATCACGCGTGATATAATCAATTTA
ATTACCTTTTAATRCATAGATTTATTCGTTAAATGAAAACTTATATTATA
ATACTTRAATTAATAATATCACGTGAYTRTAAAATCACATCTAAAAAATC
TATTCCCGTKGAACAAACTTCMTTACCATTGTATTATATATYGATAAGAT
CACAAACRTCACGTCCTCAACTATTCATCTGCAGCTGCTTTCACAATTAA
ATTGTATGCAGCATTTTTGCATAACGTGTWCACAAATATTGTACATGTAG
CAACCCTAAATCCTCTCATTAATKAATCATTCCATGCACGTATGAATATG
CAGGAACAAGATAGCGGGCTCCAATTGCTTCACCTCCTTCTTGTTTGCGC
CGAGGCGGTTGCAAAAGAAGACTACATGTTAGCAAGAAGGTACCTCCACC
ACCTGAACCGAGTGGTGACGCCACTAGGCGATTCCATGCAGCGTGTTGCT
TCATGCTTCACAGATGCCCTAAGCGCACGCCTGGCCGCCACTCTAACCAC
AAACCCTAGGGCTTCCGCCCCACAACCCTTCTCTCCGTTCCCTCCAAACT
CGCTTGAAATCCTCAAAATCTACCAAATCGTCTACCAAGCCTGCCCCTAC
ATCAAATTCGCACACTTCACCGCCAACCAAGCCATCTTCGAGGCGTTYGA
GTCTGAAGAACGTGTACACGTCATCGACCTAGATATTCTTCAAGGGTATC
AGTGGCCGGCTTTCATGCAGGCCTTAGCTGCCCGCCCCAGCGGGGCTCCC
TTTCTCCGCATAACAGGGGTGGGCCCCTGCATAGAGGCAGTGAAAGAGAC
TGGCCGGTGTTTGACAGAACTAGCCCTATCTCTTCACGTCCCGTTTGAGT
TCCATGCAGTTGGGGAGCAACTTGAAGATCTCAAGCCACACATGTTCAAC
CGGAGGATTGGCGAAGCGCTGGCTGTAAACACGGTGAACCGACTCCACCG
AGTTCCGGTCAATTRCCTCGGGAACTTGCTAGCCATGATCCGTGACCAAG
CACCCAACATTGTGACATTGGTGGAACAAGAAGCGAGTCATAACGGGCCC
TACTTTTTGGGCAGGTTTCTCGAGGCTTTACATTACTACTCGGCGATTTT
CGACTCGTTAGATGCGACCTTTCCGCCGGACTCGGCGCAGAGGGCGAAGG
TGGAGCAGTACATATTTGCGCCKGAGATCCGGAACATCGTRGCGTGTGAA
GGGGCGGAGCGGACGGAGAGGCACGAGAGGTTGGAGAAGTGGAGGAAGGT
GATGGAGAGTAAAGGGTTTAAGAGCGTGGCGCTGAGTGCGAACGCGGTGA
CTCAGTCGAAGATATTGCTAGGGTTGTATTCTTGCGACGGGTATAGGATG
ACGGAGGACAACGGTTGTTTGCTCTTGGGGTGGCAAGACAGGTCTATTAT
GGCTGCTTCTGCATGGAGATGCTGA

mRNA from alignment at chr9:562753..565977-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000441376 ID=MDP0000441376; Name=MDP0000441376; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:562753..565977- (Malus x domestica

mRNA from alignment at MDC017689.144:6358..9582-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000441376 ID=MDP0000441376; Name=MDP0000441376; organism=Malus x domestica; type=mRNA; length=3225bp; location=Sequence derived from: MDC017689.144:6358..9582- (Malus x domestica
ATGGGGTCTATCAAGAGTGAGAACTCATGCAGCTCCGACCTCARACCCCC
GTCTCCGACTGAATCCACGACGATGTCTATGTCCATATCAGAATCTAAGA
AAATCACAATTCCTCCATCCTCAGAGTTGGATCAGCAGAGCACCCTAACT
CCGCCGAGCCTCAACTTTCCAACGCTCAAGTTCGAGCTAGACGATGTTGA
AGTCCAATCTCCCGACCATTCCATCTGGGAGTCTTTGTTCTCCGAGCAAT
TCGAAACCGATTTTATGATCTTGTCGCCCGTCCCAAACAACATGCCGAAC
TCTCCCCAAAACGGTGGTTCTGCAACTCATCAGAATTACAATTACAATTA
CGCTCAGTCCATGCAAGGGCAGAGCCTCTCGGGCTGCTCTTCCCCTAGGT
TTTCGCCGCACCTCGGAGCATTCAGCAGCACCCATAACCCTAAAGGCAAA
GGACTCAGCCCGCTCCGTAGGGTTTTCAACTCTCCTGTTAACCAGTACAT
GGAGCCGGCTGATCAGAACACGCAGTCACTCCCTGTTCCTGTTTCCATCG
AAGACTTCTTGGACGATTATGAACGTGACGGATTCATAKCCGCATTCCCA
ACAACAGCATCGTCCAAGATATCAGGAAGCTCGTCACAGTCTTACAATCA
TCACGATCACTTGCCAGCATCATCGACAGTTCCATCCGCCACGTTGGACT
GCATGCCGATGWATAACTCTTCGAGGTTTAGTAGATCGGCGAGTGAAGCG
TCGTTGGTTACGGCTGGTAATTCTCAGCTGACACAAGAGAGAAGCAGCGG
TAGCGGTTATCAGCAGATGAGCGGCGCGCCACTTTCACAACAATTGCAAC
AAGAACGCATGCAAGAGAAGCAGCAACAGCCGCAAAAACAACACCACCAC
CAACCCCAACAACAACAGAACCTTCATTATAATATGATGGCGCCTGCTAT
CCCTATGGCACATGAGCAGGTGAATTTTTGTATCTTAATCATTTAAATTT
TGTACGTGCATACATCTTACTTAATTGAACGATGTAAACAAGAAGATACA
TTATCGGTAAGGGCAGTGCGAKAAATTTTTCATTGTGAYGGAAACATGAG
TGGTAYATCACGTGTTATTATATAARTGGTAGAAAGTTTAATTTTTTAAG
TTACATATTCCACTATTTGTATAGTGACAYGTGGTGTACGATCCCGTRTT
YCAGTMATATTGAAAAATTTCTCGRATAATGCTAGGRAGACTAGATTTGT
AGACAAAATTTTGGAAATTAAAGGACATRAAAGTTGATGATTKGYTTATT
AYTTAAGYRTTRATAAACGTGTTYATTCCTATTAGTGACCCATCATTTAA
TTTGCAAATTTTATTTTCAAATTTATCTCYCTARCATTATCCTATGGGTA
ATMTTTGACTATGCATATTGATCAAAGTATTAGGATAATCTTTGACTATG
CATATTGACCAACAGAATACTTTGATTAGAATTTAGGGTCACTAATATTT
TTGTAAATTATATAATGTGKATAGTTGAATTTATTTTTTTAATTATTAAA
GAAAAAATTCAACTTTCAATTRCTACATCATCATGTGGCCCACAATAYAT
AGTCTAAATATATGATCTCTCYGGTAGCACTCTTATCAAATTTGAGGCCG
ACTTCATTTGTTTATTTTTAACAAGRTATACTATGACTCTATGAGATAWA
ATGTGTACGAGTCGGTCAACACATTTGATGACACCTATTATTGTTGGAGA
AGCTTTTGATTAYGATTTGTTATATTATCACGCGTGATATAATCAATTTA
ATTACCTTTTAATRCATAGATTTATTCGTTAAATGAAAACTTATATTATA
ATACTTRAATTAATAATATCACGTGAYTRTAAAATCACATCTAAAAAATC
TATTCCCGTKGAACAAACTTCMTTACCATTGTATTATATATYGATAAGAT
CACAAACRTCACGTCCTCAACTATTCATCTGCAGCTGCTTTCACAATTAA
ATTGTATGCAGCATTTTTGCATAACGTGTWCACAAATATTGTACATGTAG
CAACCCTAAATCCTCTCATTAATKAATCATTCCATGCACGTATGAATATG
CAGGAACAAGATAGCGGGCTCCAATTGCTTCACCTCCTTCTTGTTTGCGC
CGAGGCGGTTGCAAAAGAAGACTACATGTTAGCAAGAAGGTACCTCCACC
ACCTGAACCGAGTGGTGACGCCACTAGGCGATTCCATGCAGCGTGTTGCT
TCATGCTTCACAGATGCCCTAAGCGCACGCCTGGCCGCCACTCTAACCAC
AAACCCTAGGGCTTCCGCCCCACAACCCTTCTCTCCGTTCCCTCCAAACT
CGCTTGAAATCCTCAAAATCTACCAAATCGTCTACCAAGCCTGCCCCTAC
ATCAAATTCGCACACTTCACCGCCAACCAAGCCATCTTCGAGGCGTTYGA
GTCTGAAGAACGTGTACACGTCATCGACCTAGATATTCTTCAAGGGTATC
AGTGGCCGGCTTTCATGCAGGCCTTAGCTGCCCGCCCCAGCGGGGCTCCC
TTTCTCCGCATAACAGGGGTGGGCCCCTGCATAGAGGCAGTGAAAGAGAC
TGGCCGGTGTTTGACAGAACTAGCCCTATCTCTTCACGTCCCGTTTGAGT
TCCATGCAGTTGGGGAGCAACTTGAAGATCTCAAGCCACACATGTTCAAC
CGGAGGATTGGCGAAGCGCTGGCTGTAAACACGGTGAACCGACTCCACCG
AGTTCCGGTCAATTRCCTCGGGAACTTGCTAGCCATGATCCGTGACCAAG
CACCCAACATTGTGACATTGGTGGAACAAGAAGCGAGTCATAACGGGCCC
TACTTTTTGGGCAGGTTTCTCGAGGCTTTACATTACTACTCGGCGATTTT
CGACTCGTTAGATGCGACCTTTCCGCCGGACTCGGCGCAGAGGGCGAAGG
TGGAGCAGTACATATTTGCGCCKGAGATCCGGAACATCGTRGCGTGTGAA
GGGGCGGAGCGGACGGAGAGGCACGAGAGGTTGGAGAAGTGGAGGAAGGT
GATGGAGAGTAAAGGGTTTAAGAGCGTGGCGCTGAGTGCGAACGCGGTGA
CTCAGTCGAAGATATTGCTAGGGTTGTATTCTTGCGACGGGTATAGGATG
ACGGAGGACAACGGTTGTTTGCTCTTGGGGTGGCAAGACAGGTCTATTAT
GGCTGCTTCTGCATGGAGATGCTGA

Coding sequence (CDS) from alignment at MDC017689.144:6358..9582-

>MDP0000441376 ID=MDP0000441376; Name=MDP0000441376; organism=Malus x domestica; type=CDS; length=2091bp; location=Sequence derived from: MDC017689.144:6358..9582- (Malus x domestica
ATGGGGTCTATCAAGAGTGAGAACTCATGCAGCTCCGACCTCARACCCCC
GTCTCCGACTGAATCCACGACGATGTCTATGTCCATATCAGAATCTAAGA
AAATCACAATTCCTCCATCCTCAGAGTTGGATCAGCAGAGCACCCTAACT
CCGCCGAGCCTCAACTTTCCAACGCTCAAGTTCGAGCTAGACGATGTTGA
AGTCCAATCTCCCGACCATTCCATCTGGGAGTCTTTGTTCTCCGAGCAAT
TCGAAACCGATTTTATGATCTTGTCGCCCGTCCCAAACAACATGCCGAAC
TCTCCCCAAAACGGTGGTTCTGCAACTCATCAGAATTACAATTACAATTA
CGCTCAGTCCATGCAAGGGCAGAGCCTCTCGGGCTGCTCTTCCCCTAGGT
TTTCGCCGCACCTCGGAGCATTCAGCAGCACCCATAACCCTAAAGGCAAA
GGACTCAGCCCGCTCCGTAGGGTTTTCAACTCTCCTGTTAACCAGTACAT
GGAGCCGGCTGATCAGAACACGCAGTCACTCCCTGTTCCTGTTTCCATCG
AAGACTTCTTGGACGATTATGAACGTGACGGATTCATAKCCGCATTCCCA
ACAACAGCATCGTCCAAGATATCAGGAAGCTCGTCACAGTCTTACAATCA
TCACGATCACTTGCCAGCATCATCGACAGTTCCATCCGCCACGTTGGACT
GCATGCCGATGWATAACTCTTCGAGGTTTAGTAGATCGGCGAGTGAAGCG
TCGTTGGTTACGGCTGGTAATTCTCAGCTGACACAAGAGAGAAGCAGCGG
TAGCGGTTATCAGCAGATGAGCGGCGCGCCACTTTCACAACAATTGCAAC
AAGAACGCATGCAAGAGAAGCAGCAACAGCCGCAAAAACAACACCACCAC
CAACCCCAACAACAACAGAACCTTCATTATAATATGATGGCGCCTGCTAT
CCCTATGGCACATGAGCAGGAACAAGATAGCGGGCTCCAATTGCTTCACC
TCCTTCTTGTTTGCGCCGAGGCGGTTGCAAAAGAAGACTACATGTTAGCA
AGAAGGTACCTCCACCACCTGAACCGAGTGGTGACGCCACTAGGCGATTC
CATGCAGCGTGTTGCTTCATGCTTCACAGATGCCCTAAGCGCACGCCTGG
CCGCCACTCTAACCACAAACCCTAGGGCTTCCGCCCCACAACCCTTCTCT
CCGTTCCCTCCAAACTCGCTTGAAATCCTCAAAATCTACCAAATCGTCTA
CCAAGCCTGCCCCTACATCAAATTCGCACACTTCACCGCCAACCAAGCCA
TCTTCGAGGCGTTYGAGTCTGAAGAACGTGTACACGTCATCGACCTAGAT
ATTCTTCAAGGGTATCAGTGGCCGGCTTTCATGCAGGCCTTAGCTGCCCG
CCCCAGCGGGGCTCCCTTTCTCCGCATAACAGGGGTGGGCCCCTGCATAG
AGGCAGTGAAAGAGACTGGCCGGTGTTTGACAGAACTAGCCCTATCTCTT
CACGTCCCGTTTGAGTTCCATGCAGTTGGGGAGCAACTTGAAGATCTCAA
GCCACACATGTTCAACCGGAGGATTGGCGAAGCGCTGGCTGTAAACACGG
TGAACCGACTCCACCGAGTTCCGGTCAATTRCCTCGGGAACTTGCTAGCC
ATGATCCGTGACCAAGCACCCAACATTGTGACATTGGTGGAACAAGAAGC
GAGTCATAACGGGCCCTACTTTTTGGGCAGGTTTCTCGAGGCTTTACATT
ACTACTCGGCGATTTTCGACTCGTTAGATGCGACCTTTCCGCCGGACTCG
GCGCAGAGGGCGAAGGTGGAGCAGTACATATTTGCGCCKGAGATCCGGAA
CATCGTRGCGTGTGAAGGGGCGGAGCGGACGGAGAGGCACGAGAGGTTGG
AGAAGTGGAGGAAGGTGATGGAGAGTAAAGGGTTTAAGAGCGTGGCGCTG
AGTGCGAACGCGGTGACTCAGTCGAAGATATTGCTAGGGTTGTATTCTTG
CGACGGGTATAGGATGACGGAGGACAACGGTTGTTTGCTCTTGGGGTGGC
AAGACAGGTCTATTATGGCTGCTTCTGCATGGAGATGCTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS