MDP0000431628, MDP0000431628 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000431628
Unique Name	MDP0000431628
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1596

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr14	chromosome	chr14:22609508..22611103 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC013670.194	contig	MDC013670.194:941..2536 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000431628_exon_1	MDP0000431628_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000431628	MDP0000431628	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 160..530 score: 4.3e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 134..511 score: 56
None	No IPR available	SEG	seg	seg	coord: 99..112 score: NAcoord: 130..151 score
None	No IPR available	SEG	seg	seg	coord: 6..28 score
None	No IPR available	SEG	seg	seg	coord: 29..42 score
None	No IPR available	SEG	seg	seg	coord: 8..22 score: NAcoord: 70..79 score
None	No IPR available	SEG	seg	seg	coord: 67..80 score: NAcoord: 84..94 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:22609508..22611103-
mRNA from alignment at MDC013670.194:941..2536-
coding sequence from alignment at MDC013670.194:941..2536-

mRNA sequence

>MDP0000431628 ID=MDP0000431628; Name=MDP0000431628; organism=Malus x domestica; type=mRNA; length=1596bp
ATGGCACTGAGCCGAAACTTCCTGCCTGAGGAGTACATGATCAATCATGA
AAGGACTAATAAAATGAGTGTCCTTGATCTCATTACTCACTCAGCTGCCT
CAGCCATGCCTTGCTATCCTTATCCACACACGCCCTTGCTGGAGGAGGGC
GGTACAGCTTCTACCCCCCCTYACTYRGATGAAAGCGGAAACCATAAGAG
GCTGAAAAGGACTACAAGTATCTCCGACTCTATGTCAAGTCATAACAGTC
TTTATAGTGGTGGAGGAAGCGGAGATAGTTGCATTACTGACATCAGCCTC
AGTCGCCGAAGCAGCACGAATAGCTTGAATACCTTGCCAAGGCTTCATTT
CCGGGACCATATTTGGACYTACACACAAAGGTACCTTGCAGCTGAAGCTG
TTGAGGAGGCAGCGRCAKYGATGTCCAATGCCGAGGGAAATGAAGAGGAG
GAGGACGRAACYRCTKATGGGATGAGGCTTGTTCAGCTCCTAATTGCTTG
TGCTGAAGCTGTTGCTTGTCGCGACAAGTCMCATGCCTCYGCGTTACTAT
CTGAGCTTCGGGCCAATGCCTTGGTCTTTGGCTCTTCATTCCAGCGTGTG
GCATCATGTTTTGTCCAAGGCCTTGCCAACCGCCTAGCTCTGGTTCAACC
GCTYGGGGCAGTAGGGTTCATTGGGTCCGCGATGAGCACAAAAGACTTTG
CCTTGGACAAGAAGGAAGAGGCATTGCGCCTTGTTTATGAGATATGCCCC
CACATTCAGTTTGGTCACTTTGTGGCCAATTCATCAATATTGGAAGCCTT
TGAGGGAGAGAGTTTTGTTCATGTAGTAGACCTTGGGATGACCCTTGGTC
TACCWCATGGAGACCAGTGGCRAGGCTTGATCGAGAGCCTTGCCACACGC
ACAGGCCAGCCGCCTACACGCCTTAGAATAACCGGTGTTGGCCTTTACGG
TGACAGATTGCAAATCATTGGAGAAGAGCTYGAGGCCTATGCCGACAGCT
TGGGAATAAACCTGGAGTTTTCTGTGGTGGWAAGCAACTTGGAAAACCTG
CGTCCGRAGGAYATTAAAATGTATGATGGTGAAGTCCTTGTTGTCAATAG
CATTCTTCAGTTGCATTGTGTGGTGAAAGAAAGCAGAGGAGCTCTCAATT
CTGTCCTGCAGATGGTCCATGAGCTTTCGCCGAAAATCTTGGTTCTTGTG
GAGCAAGACTCAAGCCACAATGGACCTTTTTTTTTGGGGAGGTTTATGGA
GGCACTGCATTATTACTCTGCAATCTTTGACTCCCTAGATGCCATGCTGC
CAAAATATGACACGAGGCGCGCGAAGATGGAGCAGTTCTACTTTGCTGAG
GAGATTAAGAACATAATCAGCTGCGAGGGCCGGCAAGGTGGAGAGGCACG
AGAGGTTGATCAGTGGCGCCGGAGGATGAGCCGGGCAGGGTTTCAGGCTG
CGCCGATTAAGATGCTGGCGCAGGCAAAGCAGTGGCTTGGGAAGATCAAG
GTCTGTGAGGGTTACACTATTTTGGAAGAGAAGGGTTGCCTGGTTCTTGG
TTGGAAATCTAAGCCCATTGTTGCTGCCTCCTGCTGGAAATGCTAA

protein sequence of MDP0000431628

>MDP0000431628 ID=MDP0000431628; Name=MDP0000431628; organism=Malus x domestica; type=polypeptide; length=532bp
MALSRNFLPEEYMINHERTNKMSVLDLITHSAASAMPCYPYPHTPLLEEG
GTASTPPXXDESGNHKRLKRTTSISDSMSSHNSLYSGGGSGDSCITDISL
SRRSSTNSLNTLPRLHFRDHIWTYTQRYLAAEAVEEAAXXMSNAEGNEEE
EDXTXXGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRV
ASCFVQGLANRLALVQPLGAVGFIGSAMSTKDFALDKKEEALRLVYEICP
HIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPHGDQWXGLIESLATR
TGQPPTRLRITGVGLYGDRLQIIGEELEAYADSLGINLEFSVVXSNLENL
RPXDIKMYDGEVLVVNSILQLHCVVKESRGALNSVLQMVHELSPKILVLV
EQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAE
EIKNIISCEGRQGGEAREVDQWRRRMSRAGFQAAPIKMLAQAKQWLGKIK
VCEGYTILEEKGCLVLGWKSKPIVAASCWKC*

mRNA from alignment at chr14:22609508..22611103-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000431628 ID=MDP0000431628; Name=MDP0000431628; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr14:22609508..22611103- (Malus x domestica

mRNA from alignment at MDC013670.194:941..2536-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000431628 ID=MDP0000431628; Name=MDP0000431628; organism=Malus x domestica; type=mRNA; length=1596bp; location=Sequence derived from: MDC013670.194:941..2536- (Malus x domestica
ATGGCACTGAGCCGAAACTTCCTGCCTGAGGAGTACATGATCAATCATGA
AAGGACTAATAAAATGAGTGTCCTTGATCTCATTACTCACTCAGCTGCCT
CAGCCATGCCTTGCTATCCTTATCCACACACGCCCTTGCTGGAGGAGGGC
GGTACAGCTTCTACCCCCCCTYACTYRGATGAAAGCGGAAACCATAAGAG
GCTGAAAAGGACTACAAGTATCTCCGACTCTATGTCAAGTCATAACAGTC
TTTATAGTGGTGGAGGAAGCGGAGATAGTTGCATTACTGACATCAGCCTC
AGTCGCCGAAGCAGCACGAATAGCTTGAATACCTTGCCAAGGCTTCATTT
CCGGGACCATATTTGGACYTACACACAAAGGTACCTTGCAGCTGAAGCTG
TTGAGGAGGCAGCGRCAKYGATGTCCAATGCCGAGGGAAATGAAGAGGAG
GAGGACGRAACYRCTKATGGGATGAGGCTTGTTCAGCTCCTAATTGCTTG
TGCTGAAGCTGTTGCTTGTCGCGACAAGTCMCATGCCTCYGCGTTACTAT
CTGAGCTTCGGGCCAATGCCTTGGTCTTTGGCTCTTCATTCCAGCGTGTG
GCATCATGTTTTGTCCAAGGCCTTGCCAACCGCCTAGCTCTGGTTCAACC
GCTYGGGGCAGTAGGGTTCATTGGGTCCGCGATGAGCACAAAAGACTTTG
CCTTGGACAAGAAGGAAGAGGCATTGCGCCTTGTTTATGAGATATGCCCC
CACATTCAGTTTGGTCACTTTGTGGCCAATTCATCAATATTGGAAGCCTT
TGAGGGAGAGAGTTTTGTTCATGTAGTAGACCTTGGGATGACCCTTGGTC
TACCWCATGGAGACCAGTGGCRAGGCTTGATCGAGAGCCTTGCCACACGC
ACAGGCCAGCCGCCTACACGCCTTAGAATAACCGGTGTTGGCCTTTACGG
TGACAGATTGCAAATCATTGGAGAAGAGCTYGAGGCCTATGCCGACAGCT
TGGGAATAAACCTGGAGTTTTCTGTGGTGGWAAGCAACTTGGAAAACCTG
CGTCCGRAGGAYATTAAAATGTATGATGGTGAAGTCCTTGTTGTCAATAG
CATTCTTCAGTTGCATTGTGTGGTGAAAGAAAGCAGAGGAGCTCTCAATT
CTGTCCTGCAGATGGTCCATGAGCTTTCGCCGAAAATCTTGGTTCTTGTG
GAGCAAGACTCAAGCCACAATGGACCTTTTTTTTTGGGGAGGTTTATGGA
GGCACTGCATTATTACTCTGCAATCTTTGACTCCCTAGATGCCATGCTGC
CAAAATATGACACGAGGCGCGCGAAGATGGAGCAGTTCTACTTTGCTGAG
GAGATTAAGAACATAATCAGCTGCGAGGGCCGGCAAGGTGGAGAGGCACG
AGAGGTTGATCAGTGGCGCCGGAGGATGAGCCGGGCAGGGTTTCAGGCTG
CGCCGATTAAGATGCTGGCGCAGGCAAAGCAGTGGCTTGGGAAGATCAAG
GTCTGTGAGGGTTACACTATTTTGGAAGAGAAGGGTTGCCTGGTTCTTGG
TTGGAAATCTAAGCCCATTGTTGCTGCCTCCTGCTGGAAATGCTAA

Coding sequence (CDS) from alignment at MDC013670.194:941..2536-

>MDP0000431628 ID=MDP0000431628; Name=MDP0000431628; organism=Malus x domestica; type=CDS; length=1596bp; location=Sequence derived from: MDC013670.194:941..2536- (Malus x domestica
ATGGCACTGAGCCGAAACTTCCTGCCTGAGGAGTACATGATCAATCATGA
AAGGACTAATAAAATGAGTGTCCTTGATCTCATTACTCACTCAGCTGCCT
CAGCCATGCCTTGCTATCCTTATCCACACACGCCCTTGCTGGAGGAGGGC
GGTACAGCTTCTACCCCCCCTYACTYRGATGAAAGCGGAAACCATAAGAG
GCTGAAAAGGACTACAAGTATCTCCGACTCTATGTCAAGTCATAACAGTC
TTTATAGTGGTGGAGGAAGCGGAGATAGTTGCATTACTGACATCAGCCTC
AGTCGCCGAAGCAGCACGAATAGCTTGAATACCTTGCCAAGGCTTCATTT
CCGGGACCATATTTGGACYTACACACAAAGGTACCTTGCAGCTGAAGCTG
TTGAGGAGGCAGCGRCAKYGATGTCCAATGCCGAGGGAAATGAAGAGGAG
GAGGACGRAACYRCTKATGGGATGAGGCTTGTTCAGCTCCTAATTGCTTG
TGCTGAAGCTGTTGCTTGTCGCGACAAGTCMCATGCCTCYGCGTTACTAT
CTGAGCTTCGGGCCAATGCCTTGGTCTTTGGCTCTTCATTCCAGCGTGTG
GCATCATGTTTTGTCCAAGGCCTTGCCAACCGCCTAGCTCTGGTTCAACC
GCTYGGGGCAGTAGGGTTCATTGGGTCCGCGATGAGCACAAAAGACTTTG
CCTTGGACAAGAAGGAAGAGGCATTGCGCCTTGTTTATGAGATATGCCCC
CACATTCAGTTTGGTCACTTTGTGGCCAATTCATCAATATTGGAAGCCTT
TGAGGGAGAGAGTTTTGTTCATGTAGTAGACCTTGGGATGACCCTTGGTC
TACCWCATGGAGACCAGTGGCRAGGCTTGATCGAGAGCCTTGCCACACGC
ACAGGCCAGCCGCCTACACGCCTTAGAATAACCGGTGTTGGCCTTTACGG
TGACAGATTGCAAATCATTGGAGAAGAGCTYGAGGCCTATGCCGACAGCT
TGGGAATAAACCTGGAGTTTTCTGTGGTGGWAAGCAACTTGGAAAACCTG
CGTCCGRAGGAYATTAAAATGTATGATGGTGAAGTCCTTGTTGTCAATAG
CATTCTTCAGTTGCATTGTGTGGTGAAAGAAAGCAGAGGAGCTCTCAATT
CTGTCCTGCAGATGGTCCATGAGCTTTCGCCGAAAATCTTGGTTCTTGTG
GAGCAAGACTCAAGCCACAATGGACCTTTTTTTTTGGGGAGGTTTATGGA
GGCACTGCATTATTACTCTGCAATCTTTGACTCCCTAGATGCCATGCTGC
CAAAATATGACACGAGGCGCGCGAAGATGGAGCAGTTCTACTTTGCTGAG
GAGATTAAGAACATAATCAGCTGCGAGGGCCGGCAAGGTGGAGAGGCACG
AGAGGTTGATCAGTGGCGCCGGAGGATGAGCCGGGCAGGGTTTCAGGCTG
CGCCGATTAAGATGCTGGCGCAGGCAAAGCAGTGGCTTGGGAAGATCAAG
GTCTGTGAGGGTTACACTATTTTGGAAGAGAAGGGTTGCCTGGTTCTTGG
TTGGAAATCTAAGCCCATTGTTGCTGCCTCCTGCTGGAAATGCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS