MDP0000307619, MDP0000307619 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000307619
Unique Name	MDP0000307619
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1674

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr10	chromosome	chr10:18265808..18267481 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC017675.49	contig	MDC017675.49:21436..23109 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000307619_exon_1	MDP0000307619_exon_1	Malus x domestica	CDS
MDP0000307619_exon_2	MDP0000307619_exon_2	Malus x domestica	CDS

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 125..481 score: 2.7e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 99..460 score: 51
None	No IPR available	SEG	seg	seg	coord: 11..32 score
None	No IPR available	SEG	seg	seg	coord: 1..11 score
None	No IPR available	SEG	seg	seg	coord: 10..24 score

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at chr10:18265808..18267481-
mRNA from alignment at MDC017675.49:21436..23109-
coding sequence from alignment at MDC017675.49:21436..23109-

mRNA sequence

>MDP0000307619 ID=MDP0000307619; Name=MDP0000307619; organism=Malus x domestica; type=mRNA; length=1674bp
ATGTTACTGGCTTCCAAAATAATCCCATCCCCCAATCCCAAGCCCGTCGA
AAACCGGTTTATAAACTTGGAGAGGAGTGAACTCTCTCAGTGGGTGGAGC
ACATAACGAAACACCTCATCGACGACTTGCCTGAACCCGCCACCACCAAC
ACGGCCTCCACCGACACGTTACAGACGTCTGAGGACTATTTTGTCCCGTC
ATCACTTTCCACCGATTTAATTAGTCCGAGGAAAGTCCCACGGAGAAGCT
ATGGTGAGCATGAGCATCATGAGCTCCAATGGGGCAATGAACTTCAACTC
CATGCAGATAATAGCGACGTAAGAGCAAGAGGAGGGAATAATATGAGTAA
GCTCGATGAGCATGGCTTAACCCTAATCACCCTCCTCTTCGAATGTGCTG
TTGCCATCTCCGTTGACAACCTCCCCGAGGCCCATCGGATGCTCCTTGAG
CTAACCCATATGGCCTCGCCGTATGGGCCATCATGCGCTGAGCGCGTGGT
GGCTTATTTCGCCAAGGCCATGGCTAGTAGGGTTATCAGCTCCTGGTTAG
GCATTTGCTCTCCATTGATCAACTACAAAAGCGTTCATAGTGCTTTTCAA
GTCTTCAATACCATCTCTCCTTTCATCAAATTTGCCCACTTCACTTCCAA
CCAAGCCATCCTCGAGGCCTTTCACCACCGCGATAGGGTGCACATTCTTG
ACCTCGACATCATGCAGGTATATATGGTTCGAAATTTCGATAGTACCTTA
CGGATAATACTTGCCTCCTTCCATTAGAATTAGACATTAATTCCAATACA
GTTCTGACAATCATGTTTAATCTCATATGTATTTAATGAGTTATTTTTTT
ATATGTCTCAAACTGTGATTTTGCATGAACGAGTTGTTTCCCTCATGTTA
GCTAACATCGATATATATTGTTTGCAGGGTTTGCAATGGCCAGCCTTGTT
TCACATTCTCGCCACACGCATGGAGGGTCCTCCACACCTGAGAATGACCG
GTGTGGGCACATCATCGGAAATTCTTTTGGAGACCGGAAAGCAGCTCTCG
AATTTTGCTAAGCGGCTTGGACTATCATTCGAATTTCATCCCATTGTAAG
GACAGTTGGCGAGGTAGATGCTTCCATGGTGCAAGTACAGCGAGGGGAGA
CCCTCGCCGTGCACTGGCTGCAACATTCGTTGTATGATGCAACCGGCTCC
GACTGGAAAACGTTGAGACTCATCGAAGAACTAGCACCAAGACTTGTCAC
ATTGGTAGAGCAAGACATGTCACATAGTGGCTCATTTTTGGACCGTTTTG
TTGGGTCGTTACATTACTATTCGACAATGTTTGATTCACTAGAATCATAC
TTGCCCAGTGACAACCCTAGCAGGCACAAGGTGGAGCATAGTATGTTTTA
TAGAGAAATCAACAACATATTGGCAATTGGAGGCCCGGCAAGAAGCGGCG
AGGACAAGTTCCGGCAGTGGAGGAGTGAACTTGGGGCAAGAAGTGAGTTC
ATGCAAGTAGAGATGAGTGGAAATTCAATGGCACAAGCACAGTTGATATT
GAATATGTTTCCTCCTACACATGGGTACAGCCTTGTGCAAGGAGATGGGA
CTATTAGGCTTGGGTGGAAGGATACTAGTTTGTATGTTGCTTCTGCATGG
ACTTGCTCTCATGCTTCAAGATAG

mRNA from alignment at chr10:18265808..18267481-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000307619 ID=MDP0000307619; Name=MDP0000307619; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr10:18265808..18267481- (Malus x domestica

mRNA from alignment at MDC017675.49:21436..23109-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000307619 ID=MDP0000307619; Name=MDP0000307619; organism=Malus x domestica; type=mRNA; length=1674bp; location=Sequence derived from: MDC017675.49:21436..23109- (Malus x domestica
ATGTTACTGGCTTCCAAAATAATCCCATCCCCCAATCCCAAGCCCGTCGA
AAACCGGTTTATAAACTTGGAGAGGAGTGAACTCTCTCAGTGGGTGGAGC
ACATAACGAAACACCTCATCGACGACTTGCCTGAACCCGCCACCACCAAC
ACGGCCTCCACCGACACGTTACAGACGTCTGAGGACTATTTTGTCCCGTC
ATCACTTTCCACCGATTTAATTAGTCCGAGGAAAGTCCCACGGAGAAGCT
ATGGTGAGCATGAGCATCATGAGCTCCAATGGGGCAATGAACTTCAACTC
CATGCAGATAATAGCGACGTAAGAGCAAGAGGAGGGAATAATATGAGTAA
GCTCGATGAGCATGGCTTAACCCTAATCACCCTCCTCTTCGAATGTGCTG
TTGCCATCTCCGTTGACAACCTCCCCGAGGCCCATCGGATGCTCCTTGAG
CTAACCCATATGGCCTCGCCGTATGGGCCATCATGCGCTGAGCGCGTGGT
GGCTTATTTCGCCAAGGCCATGGCTAGTAGGGTTATCAGCTCCTGGTTAG
GCATTTGCTCTCCATTGATCAACTACAAAAGCGTTCATAGTGCTTTTCAA
GTCTTCAATACCATCTCTCCTTTCATCAAATTTGCCCACTTCACTTCCAA
CCAAGCCATCCTCGAGGCCTTTCACCACCGCGATAGGGTGCACATTCTTG
ACCTCGACATCATGCAGGTATATATGGTTCGAAATTTCGATAGTACCTTA
CGGATAATACTTGCCTCCTTCCATTAGAATTAGACATTAATTCCAATACA
GTTCTGACAATCATGTTTAATCTCATATGTATTTAATGAGTTATTTTTTT
ATATGTCTCAAACTGTGATTTTGCATGAACGAGTTGTTTCCCTCATGTTA
GCTAACATCGATATATATTGTTTGCAGGGTTTGCAATGGCCAGCCTTGTT
TCACATTCTCGCCACACGCATGGAGGGTCCTCCACACCTGAGAATGACCG
GTGTGGGCACATCATCGGAAATTCTTTTGGAGACCGGAAAGCAGCTCTCG
AATTTTGCTAAGCGGCTTGGACTATCATTCGAATTTCATCCCATTGTAAG
GACAGTTGGCGAGGTAGATGCTTCCATGGTGCAAGTACAGCGAGGGGAGA
CCCTCGCCGTGCACTGGCTGCAACATTCGTTGTATGATGCAACCGGCTCC
GACTGGAAAACGTTGAGACTCATCGAAGAACTAGCACCAAGACTTGTCAC
ATTGGTAGAGCAAGACATGTCACATAGTGGCTCATTTTTGGACCGTTTTG
TTGGGTCGTTACATTACTATTCGACAATGTTTGATTCACTAGAATCATAC
TTGCCCAGTGACAACCCTAGCAGGCACAAGGTGGAGCATAGTATGTTTTA
TAGAGAAATCAACAACATATTGGCAATTGGAGGCCCGGCAAGAAGCGGCG
AGGACAAGTTCCGGCAGTGGAGGAGTGAACTTGGGGCAAGAAGTGAGTTC
ATGCAAGTAGAGATGAGTGGAAATTCAATGGCACAAGCACAGTTGATATT
GAATATGTTTCCTCCTACACATGGGTACAGCCTTGTGCAAGGAGATGGGA
CTATTAGGCTTGGGTGGAAGGATACTAGTTTGTATGTTGCTTCTGCATGG
ACTTGCTCTCATGCTTCAAGATAG

Coding sequence (CDS) from alignment at MDC017675.49:21436..23109-

>MDP0000307619 ID=MDP0000307619; Name=MDP0000307619; organism=Malus x domestica; type=CDS; length=1464bp; location=Sequence derived from: MDC017675.49:21436..23109- (Malus x domestica
ATGTTACTGGCTTCCAAAATAATCCCATCCCCCAATCCCAAGCCCGTCGA
AAACCGGTTTATAAACTTGGAGAGGAGTGAACTCTCTCAGTGGGTGGAGC
ACATAACGAAACACCTCATCGACGACTTGCCTGAACCCGCCACCACCAAC
ACGGCCTCCACCGACACGTTACAGACGTCTGAGGACTATTTTGTCCCGTC
ATCACTTTCCACCGATTTAATTAGTCCGAGGAAAGTCCCACGGAGAAGCT
ATGGTGAGCATGAGCATCATGAGCTCCAATGGGGCAATGAACTTCAACTC
CATGCAGATAATAGCGACGTAAGAGCAAGAGGAGGGAATAATATGAGTAA
GCTCGATGAGCATGGCTTAACCCTAATCACCCTCCTCTTCGAATGTGCTG
TTGCCATCTCCGTTGACAACCTCCCCGAGGCCCATCGGATGCTCCTTGAG
CTAACCCATATGGCCTCGCCGTATGGGCCATCATGCGCTGAGCGCGTGGT
GGCTTATTTCGCCAAGGCCATGGCTAGTAGGGTTATCAGCTCCTGGTTAG
GCATTTGCTCTCCATTGATCAACTACAAAAGCGTTCATAGTGCTTTTCAA
GTCTTCAATACCATCTCTCCTTTCATCAAATTTGCCCACTTCACTTCCAA
CCAAGCCATCCTCGAGGCCTTTCACCACCGCGATAGGGTGCACATTCTTG
ACCTCGACATCATGCAGGGTTTGCAATGGCCAGCCTTGTTTCACATTCTC
GCCACACGCATGGAGGGTCCTCCACACCTGAGAATGACCGGTGTGGGCAC
ATCATCGGAAATTCTTTTGGAGACCGGAAAGCAGCTCTCGAATTTTGCTA
AGCGGCTTGGACTATCATTCGAATTTCATCCCATTGTAAGGACAGTTGGC
GAGGTAGATGCTTCCATGGTGCAAGTACAGCGAGGGGAGACCCTCGCCGT
GCACTGGCTGCAACATTCGTTGTATGATGCAACCGGCTCCGACTGGAAAA
CGTTGAGACTCATCGAAGAACTAGCACCAAGACTTGTCACATTGGTAGAG
CAAGACATGTCACATAGTGGCTCATTTTTGGACCGTTTTGTTGGGTCGTT
ACATTACTATTCGACAATGTTTGATTCACTAGAATCATACTTGCCCAGTG
ACAACCCTAGCAGGCACAAGGTGGAGCATAGTATGTTTTATAGAGAAATC
AACAACATATTGGCAATTGGAGGCCCGGCAAGAAGCGGCGAGGACAAGTT
CCGGCAGTGGAGGAGTGAACTTGGGGCAAGAAGTGAGTTCATGCAAGTAG
AGATGAGTGGAAATTCAATGGCACAAGCACAGTTGATATTGAATATGTTT
CCTCCTACACATGGGTACAGCCTTGTGCAAGGAGATGGGACTATTAGGCT
TGGGTGGAAGGATACTAGTTTGTATGTTGCTTCTGCATGGACTTGCTCTC
ATGCTTCAAGATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS