MDP0000284679, MDP0000284679 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000284679
Unique Name	MDP0000284679
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2179

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr17	chromosome	chr17:9255749..9257927 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC007214.348	contig	MDC007214.348:10515..12693 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000284679_exon_1	MDP0000284679_exon_1	Malus x domestica	CDS
MDP0000284679_exon_2	MDP0000284679_exon_2	Malus x domestica	CDS
MDP0000284679_exon_3	MDP0000284679_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000284679	MDP0000284679	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 168..536 score: 2e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 141..518 score: 68
None	No IPR available	SEG	seg	seg	coord: 318..333 score: NAcoord: 610..622 score
None	No IPR available	COIL	coil	coiled-coil	coord: 14..20 score: NAcoord: 21..26 score: NAcoord: 27..37 score
None	No IPR available	SEG	seg	seg	coord: 18..30 score
None	No IPR available	SEG	seg	seg	coord: 46..58 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:9255749..9257927+
mRNA from alignment at MDC007214.348:10515..12693+
coding sequence from alignment at MDC007214.348:10515..12693+

mRNA sequence

>MDP0000284679 ID=MDP0000284679; Name=MDP0000284679; organism=Malus x domestica; type=mRNA; length=2179bp
ATGCAAGAATCTTACAAGCATGTAATCCCGAATGTTTCTCATCCGTTCGG
AGAACAGCCTGTGGAAGAGCCGGAGTCTTATTGTTGGCCTTCCTTCCAGA
ATGCTGACCATCAAGCATCCTCTGATGAGGTTGTCCAAGGAACTAAGCTT
TCAGTTCAAAGATTTGAACAGCACTGCASCCTTGAGTCATCCTCGGGAAC
CAGTGCCTACCCTGGTCGCAGTTCTGCATCAAGTTTAAATTTCTCAGGAA
ATGGAAGTCCAGCTTCACATCCAGATTTGCATTCCTACCAGTCTGGTGGC
TCTCCTGTCAACCAATCGTGCATGTCAAATGATACGGATGACCTGRGTCA
CAAAATGAGGGAACTGGAAAATGCTTTGCTGGGAAATGATTCAGATGCCT
TTGACGTGTACGACATCATAGATGAGGSGRGGSCGAATCAAAWTTATTCA
GAAGCAGAAGACCGGGAACAGATGATGTTGATGATCTCCAGAGGTGACTT
GACAGAAGTGCTTTGCGCATGTGCAAAAGCATTGGCAAACAATGATATGT
CAACGACTGAATGGTTGATCTCAATCCTACGTCAGATGGTGTCAGTTTCA
GGTGAGCCAATCCAACGTTTAGGAGCTTACATTTTGGAAGGTCTTATTGC
AAGGTTGGCCTCGTCGGGGAGTTCTATCTGTGCATCCCTAAGATGCAAGG
AGCCTGCCAGTGCTGAACTCCTCTCGTACATGCACATACTCTATGAAGTC
TGCCCATATTTCAAGTTCGGATATATGTCTGCAAATGGGGCGATTGCAGA
AGCTATGAAGGATGAAAGTAGAGTTCATATAATTGATTTTCAGGTAGCTC
AAGGTACTCAGTGGATTACTTTAATCCAGGCTTTAGCTACTCGGCCAGGA
GGACCCCCACAGATTAGGATCACGGGCATAGATGATTCCGCATCRGCTTA
TGTTCGGGGAGGSGGGCTTGGTGTTGTGGGACAGAGGTTGTCAAGGCTTG
CGGAGTCATGTAAGGTACCCTTTGAGTTCCATGCTGCTGGAATTTTTGGT
TCCGAGGTTCAACTTGAGGACCTTGAGATTCGACCTGGCGAGGCTATTGC
AGTGAATTTTGCCTTCATGCTGCACCACATGCCGGATGAGAGTGTGAGTA
GTCATAATCACAGGGACCGGTTGTTGAGGCTTGCYAAGAGTTTGTCACCC
AAGGTGGTGACTCTTGTTGAACAAGAATCAAACACCAACACAGCCCCTTT
CCTTCCCCGTTTCATTGACACGCTAAGCTATTTTAGGGCTGTATTTGATT
CAATTGATGTAGCTCTGCCAAGGGAGCATAGGGAGCGGATCAATGTCGAG
CAGCACTGTCTGGCACGAGAAATTGTTAACATTATAGCTTGTGAGGGGGC
GGAAAGGGTAGAACGTTATGAGCCTCTCAGTAAGTGGAGGTCACGATTCA
TTATGGCTGGGTTTTCGCCTTATCAACTGAGCTCCTTCGTAAATGCAACA
ATCAAGACTTTACTGCAGAGTTATTCTGAGAAGTAYACGCTTGAAGAGAT
AGACGGAGCTTTATATCTCGGCTGGATGAATAAACCACTGGTTGCCTCTT
GTGCATGGAGGTAAAARCACTTGAAAATTTGTGTTTCTTGGTCATGTATT
GAACCCTAAGTTATCTTCTGCTCTCGTTTGAACTCCTCTGTGTTTCTTTT
TTTTATTCTCGTTCGGATAAGTTATCTTCTGCAGMGTGATAGTTATGTTA
TGTTGCAAGGGTTATATGCTTTAGCRGAAATAAATGAGCCTTTTTCGTAT
GCATCAACATTTCTCCCTGCAATTGTCCTGCAAACTAYTACAGCCCTATT
TACGTTCTTCCTCCTTGCGATGGARCTGGTGTCGTTGCTGAAGTCCTCGC
TACTTGTACTCAATTGAATGTCATTCTTCACTCTACATTCTGTGTCAAAG
TATGATTGAATTAGCTCGGAACTTACAGAGCTCGGATACTCGCTTCAATT
CCCCATTGCGACAGGCCATTGTTGTGCCGTTACCATACAATCTCAACAGC
TCGTTTCCATCTACCGTGCTMCTTAGATGCCTCGTAAATTCTCTCTTTGG
ATRTCTTCATCATTTCTCTATRCTTCTCAAGCGTTTCTATGGAGTTCCAC
ACCCTCAGGACGGTTTTGAKGCTGCTTGA

protein sequence of MDP0000284679

>MDP0000284679 ID=MDP0000284679; Name=MDP0000284679; organism=Malus x domestica; type=polypeptide; length=638bp
MQESYKHVIPNVSHPFGEQPVEEPESYCWPSFQNADHQASSDEVVQGTKL
SVQRFEQHCXLESSSGTSAYPGRSSASSLNFSGNGSPASHPDLHSYQSGG
SPVNQSCMSNDTDDLXHKMRELENALLGNDSDAFDVYDIIDEXXXNQXYS
EAEDREQMMLMISRGDLTEVLCACAKALANNDMSTTEWLISILRQMVSVS
GEPIQRLGAYILEGLIARLASSGSSICASLRCKEPASAELLSYMHILYEV
CPYFKFGYMSANGAIAEAMKDESRVHIIDFQVAQGTQWITLIQALATRPG
GPPQIRITGIDDSASAYVRGGGLGVVGQRLSRLAESCKVPFEFHAAGIFG
SEVQLEDLEIRPGEAIAVNFAFMLHHMPDESVSSHNHRDRLLRLAKSLSP
KVVTLVEQESNTNTAPFLPRFIDTLSYFRAVFDSIDVALPREHRERINVE
QHCLAREIVNIIACEGAERVERYEPLSKWRSRFIMAGFSPYQLSSFVNAT
IKTLLQSYSEKYTLEEIDGALYLGWMNKPLVASCAWSPIYVLPPCDGXGV
VAEVLATCTQLNVILHSTFCVKSSDTRFNSPLRQAIVVPLPYNLNSSFPS
TVLLRCLVNSLFGXLHHFSXLLKRFYGVPHPQDGFXAA

mRNA from alignment at chr17:9255749..9257927+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000284679 ID=MDP0000284679; Name=MDP0000284679; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr17:9255749..9257927+ (Malus x domestica

mRNA from alignment at MDC007214.348:10515..12693+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000284679 ID=MDP0000284679; Name=MDP0000284679; organism=Malus x domestica; type=mRNA; length=2179bp; location=Sequence derived from: MDC007214.348:10515..12693+ (Malus x domestica
ATGCAAGAATCTTACAAGCATGTAATCCCGAATGTTTCTCATCCGTTCGG
AGAACAGCCTGTGGAAGAGCCGGAGTCTTATTGTTGGCCTTCCTTCCAGA
ATGCTGACCATCAAGCATCCTCTGATGAGGTTGTCCAAGGAACTAAGCTT
TCAGTTCAAAGATTTGAACAGCACTGCASCCTTGAGTCATCCTCGGGAAC
CAGTGCCTACCCTGGTCGCAGTTCTGCATCAAGTTTAAATTTCTCAGGAA
ATGGAAGTCCAGCTTCACATCCAGATTTGCATTCCTACCAGTCTGGTGGC
TCTCCTGTCAACCAATCGTGCATGTCAAATGATACGGATGACCTGRGTCA
CAAAATGAGGGAACTGGAAAATGCTTTGCTGGGAAATGATTCAGATGCCT
TTGACGTGTACGACATCATAGATGAGGSGRGGSCGAATCAAAWTTATTCA
GAAGCAGAAGACCGGGAACAGATGATGTTGATGATCTCCAGAGGTGACTT
GACAGAAGTGCTTTGCGCATGTGCAAAAGCATTGGCAAACAATGATATGT
CAACGACTGAATGGTTGATCTCAATCCTACGTCAGATGGTGTCAGTTTCA
GGTGAGCCAATCCAACGTTTAGGAGCTTACATTTTGGAAGGTCTTATTGC
AAGGTTGGCCTCGTCGGGGAGTTCTATCTGTGCATCCCTAAGATGCAAGG
AGCCTGCCAGTGCTGAACTCCTCTCGTACATGCACATACTCTATGAAGTC
TGCCCATATTTCAAGTTCGGATATATGTCTGCAAATGGGGCGATTGCAGA
AGCTATGAAGGATGAAAGTAGAGTTCATATAATTGATTTTCAGGTAGCTC
AAGGTACTCAGTGGATTACTTTAATCCAGGCTTTAGCTACTCGGCCAGGA
GGACCCCCACAGATTAGGATCACGGGCATAGATGATTCCGCATCRGCTTA
TGTTCGGGGAGGSGGGCTTGGTGTTGTGGGACAGAGGTTGTCAAGGCTTG
CGGAGTCATGTAAGGTACCCTTTGAGTTCCATGCTGCTGGAATTTTTGGT
TCCGAGGTTCAACTTGAGGACCTTGAGATTCGACCTGGCGAGGCTATTGC
AGTGAATTTTGCCTTCATGCTGCACCACATGCCGGATGAGAGTGTGAGTA
GTCATAATCACAGGGACCGGTTGTTGAGGCTTGCYAAGAGTTTGTCACCC
AAGGTGGTGACTCTTGTTGAACAAGAATCAAACACCAACACAGCCCCTTT
CCTTCCCCGTTTCATTGACACGCTAAGCTATTTTAGGGCTGTATTTGATT
CAATTGATGTAGCTCTGCCAAGGGAGCATAGGGAGCGGATCAATGTCGAG
CAGCACTGTCTGGCACGAGAAATTGTTAACATTATAGCTTGTGAGGGGGC
GGAAAGGGTAGAACGTTATGAGCCTCTCAGTAAGTGGAGGTCACGATTCA
TTATGGCTGGGTTTTCGCCTTATCAACTGAGCTCCTTCGTAAATGCAACA
ATCAAGACTTTACTGCAGAGTTATTCTGAGAAGTAYACGCTTGAAGAGAT
AGACGGAGCTTTATATCTCGGCTGGATGAATAAACCACTGGTTGCCTCTT
GTGCATGGAGGTAAAARCACTTGAAAATTTGTGTTTCTTGGTCATGTATT
GAACCCTAAGTTATCTTCTGCTCTCGTTTGAACTCCTCTGTGTTTCTTTT
TTTTATTCTCGTTCGGATAAGTTATCTTCTGCAGMGTGATAGTTATGTTA
TGTTGCAAGGGTTATATGCTTTAGCRGAAATAAATGAGCCTTTTTCGTAT
GCATCAACATTTCTCCCTGCAATTGTCCTGCAAACTAYTACAGCCCTATT
TACGTTCTTCCTCCTTGCGATGGARCTGGTGTCGTTGCTGAAGTCCTCGC
TACTTGTACTCAATTGAATGTCATTCTTCACTCTACATTCTGTGTCAAAG
TATGATTGAATTAGCTCGGAACTTACAGAGCTCGGATACTCGCTTCAATT
CCCCATTGCGACAGGCCATTGTTGTGCCGTTACCATACAATCTCAACAGC
TCGTTTCCATCTACCGTGCTMCTTAGATGCCTCGTAAATTCTCTCTTTGG
ATRTCTTCATCATTTCTCTATRCTTCTCAAGCGTTTCTATGGAGTTCCAC
ACCCTCAGGACGGTTTTGAKGCTGCTTGA

Coding sequence (CDS) from alignment at MDC007214.348:10515..12693+

>MDP0000284679 ID=MDP0000284679; Name=MDP0000284679; organism=Malus x domestica; type=CDS; length=1917bp; location=Sequence derived from: MDC007214.348:10515..12693+ (Malus x domestica
ATGCAAGAATCTTACAAGCATGTAATCCCGAATGTTTCTCATCCGTTCGG
AGAACAGCCTGTGGAAGAGCCGGAGTCTTATTGTTGGCCTTCCTTCCAGA
ATGCTGACCATCAAGCATCCTCTGATGAGGTTGTCCAAGGAACTAAGCTT
TCAGTTCAAAGATTTGAACAGCACTGCASCCTTGAGTCATCCTCGGGAAC
CAGTGCCTACCCTGGTCGCAGTTCTGCATCAAGTTTAAATTTCTCAGGAA
ATGGAAGTCCAGCTTCACATCCAGATTTGCATTCCTACCAGTCTGGTGGC
TCTCCTGTCAACCAATCGTGCATGTCAAATGATACGGATGACCTGRGTCA
CAAAATGAGGGAACTGGAAAATGCTTTGCTGGGAAATGATTCAGATGCCT
TTGACGTGTACGACATCATAGATGAGGSGRGGSCGAATCAAAWTTATTCA
GAAGCAGAAGACCGGGAACAGATGATGTTGATGATCTCCAGAGGTGACTT
GACAGAAGTGCTTTGCGCATGTGCAAAAGCATTGGCAAACAATGATATGT
CAACGACTGAATGGTTGATCTCAATCCTACGTCAGATGGTGTCAGTTTCA
GGTGAGCCAATCCAACGTTTAGGAGCTTACATTTTGGAAGGTCTTATTGC
AAGGTTGGCCTCGTCGGGGAGTTCTATCTGTGCATCCCTAAGATGCAAGG
AGCCTGCCAGTGCTGAACTCCTCTCGTACATGCACATACTCTATGAAGTC
TGCCCATATTTCAAGTTCGGATATATGTCTGCAAATGGGGCGATTGCAGA
AGCTATGAAGGATGAAAGTAGAGTTCATATAATTGATTTTCAGGTAGCTC
AAGGTACTCAGTGGATTACTTTAATCCAGGCTTTAGCTACTCGGCCAGGA
GGACCCCCACAGATTAGGATCACGGGCATAGATGATTCCGCATCRGCTTA
TGTTCGGGGAGGSGGGCTTGGTGTTGTGGGACAGAGGTTGTCAAGGCTTG
CGGAGTCATGTAAGGTACCCTTTGAGTTCCATGCTGCTGGAATTTTTGGT
TCCGAGGTTCAACTTGAGGACCTTGAGATTCGACCTGGCGAGGCTATTGC
AGTGAATTTTGCCTTCATGCTGCACCACATGCCGGATGAGAGTGTGAGTA
GTCATAATCACAGGGACCGGTTGTTGAGGCTTGCYAAGAGTTTGTCACCC
AAGGTGGTGACTCTTGTTGAACAAGAATCAAACACCAACACAGCCCCTTT
CCTTCCCCGTTTCATTGACACGCTAAGCTATTTTAGGGCTGTATTTGATT
CAATTGATGTAGCTCTGCCAAGGGAGCATAGGGAGCGGATCAATGTCGAG
CAGCACTGTCTGGCACGAGAAATTGTTAACATTATAGCTTGTGAGGGGGC
GGAAAGGGTAGAACGTTATGAGCCTCTCAGTAAGTGGAGGTCACGATTCA
TTATGGCTGGGTTTTCGCCTTATCAACTGAGCTCCTTCGTAAATGCAACA
ATCAAGACTTTACTGCAGAGTTATTCTGAGAAGTAYACGCTTGAAGAGAT
AGACGGAGCTTTATATCTCGGCTGGATGAATAAACCACTGGTTGCCTCTT
GTGCATGGAGCCCTATTTACGTTCTTCCTCCTTGCGATGGARCTGGTGTC
GTTGCTGAAGTCCTCGCTACTTGTACTCAATTGAATGTCATTCTTCACTC
TACATTCTGTGTCAAAAGCTCGGATACTCGCTTCAATTCCCCATTGCGAC
AGGCCATTGTTGTGCCGTTACCATACAATCTCAACAGCTCGTTTCCATCT
ACCGTGCTMCTTAGATGCCTCGTAAATTCTCTCTTTGGATRTCTTCATCA
TTTCTCTATRCTTCTCAAGCGTTTCTATGGAGTTCCACACCCTCAGGACG
GTTTTGAKGCTGCTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS