MDP0000242829, MDP0000242829 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000242829
Unique Name	MDP0000242829
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1635

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:10558101..10559735 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC015695.24	contig	MDC015695.24:4590..6224 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000242829_exon_1	MDP0000242829_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000242829	MDP0000242829	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 166..537 score: 1.1e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 140..519 score: 53
None	No IPR available	SEG	seg	seg	coord: 31..46 score: NAcoord: 121..135 score
None	No IPR available	SEG	seg	seg	coord: 52..63 score
None	No IPR available	SEG	seg	seg	coord: 41..55 score
None	No IPR available	SEG	seg	seg	coord: 8..21 score
None	No IPR available	SEG	seg	seg	coord: 6..27 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:10558101..10559735+
mRNA from alignment at MDC015695.24:4590..6224+
coding sequence from alignment at MDC015695.24:4590..6224+

mRNA sequence

>MDP0000242829 ID=MDP0000242829; Name=MDP0000242829; organism=Malus x domestica; type=mRNA; length=1635bp
ATGGAAKATTTCAATGCTTGGCTCTCCTTCCCCTTGCATGAGAACCTCAA
CCATGATCTCGCCATTCGGAGGTTTTGTCCGGCGCGAGTTGAGCAAGAAC
AAGGAGGAGGTGGAGGTGGAGATGGAGAGTGGGATGAAATGCTAAATGAG
ATTGAGTTTTCTTCATCCTCTCACACCACTAGCACTCCATGCTTGCCTCC
TTCAGAGGTTGACGAATTCGTCGATAGCTTCATCAACATGGATCATTGCA
TTGATGATCATGACATTCAGTCCATGGAGAAACAACAAAGTAGTGGTAGT
ATTGAGTACTATGATCAAGATGGGATCGAGACATTTTCAATGGCGGATGA
TCTGTATGGAGATGTTCTGATGATGATGGAGGAAGAAGATGATCATGTGG
ATATGAGTGGCTTGGCGGAAGATTTTTGGGTTGCGAAAACTGAGATGATG
CCTGGGGTTGAGGTGGCGAGCCATGGTGTGGACCAAGGGCTTAACTTGGT
GCACATGTTGCTCGCTTGTGCCGAGGCTGTTGGCTGCAGGGACACCAAGC
TTGCAGACTCATTGCTCGCCCAAATTTGGGCATCTGTGAGCCCTTGGGGT
GACTCCTTGCAAAGAGTTTCATACTGCTTTGCAATGGGATTGAAATCAAG
GCTTTCGCTTCTTCAAAATGTCAACATAAATGGCACATTCAACAACGATA
TGATGGATGTTTCAGTGACCTCTAGGGACGACAAGTTGGAAGCTTTTCAA
CTCCTTAACCAAACAACTCCTTACATCGCTTTCGGTTTCATGGTTGCCAA
TGAAGCTATATGCCAAGCAGCGCAAGGGAAGGAAGACTTGCACATCATTG
ATTTGGGAATGGAGCACACTCTTCAGTGGCCTTCTTTGATYAGAACCCTA
GCATCGAGAYCCGAAGGCCCGCCTAAGAAGCTGCGAATCACCGGACTCGT
TGAAGATCACAATCTGTTTGAGCTTGAAGCTGGCATGAGAGCTCTGGTGG
AGGAGGCTAGCTCGCTAGGGATACCAACAGAATTTARTTTGATATCGGAG
CCGGTGAAACCATCACTCCTAACWAGAGAGAACCTAGACWTGAGAGAAGG
GGAAGCATTATTTGTCAATAGCATCATGCACTTGCATAAGTATGTCAAAG
ARAGTAGAGGCTCTCTGAAGGCAATTCTTCAAGCTCTGAAGAAATTAGGT
CCATCTGTGCTYACATTGGTAGAACAAGATGCAAACCACAACGGGCCATT
TTTCCTCGGGAGATTCCTCGAGTCTCTTCACTTTTACTCAGCAATTTTCG
ACTCCCTTGAGGCTAGCCTCCCACGAAACAGCCCTCAGAGGATGAAGATC
GAGAGGCAGCACTTCGCGGACGAAATCAGAAACATTGTTGCTTTTGAGGG
ATTAAATAGGATTGAGAGGCATGAGAGGGCAGACCAGTGGAGAAGGCAAT
TAGGGCGAGCCGGGTTTCAAGTGATGGGGTTGAAGTGTACAAGTCAAGCA
AGGATGATGCTATCTGTTTATGGCTGTGATGGCTACACTTTGGCTAGTGA
GAAGGGTTGTCTCCTCCTCGGGTGGAAAGGCAGGCCGATAATGCTGGCAT
CGGCATGGCAAGCGCACAGCGTGTCTTCCTCCTAG

protein sequence of MDP0000242829

>MDP0000242829 ID=MDP0000242829; Name=MDP0000242829; organism=Malus x domestica; type=polypeptide; length=544bp
MEXFNAWLSFPLHENLNHDLAIRRFCPARVEQEQGGGGGGDGEWDEMLNE
IEFSSSSHTTSTPCLPPSEVDEFVDSFINMDHCIDDHDIQSMEKQQSSGS
IEYYDQDGIETFSMADDLYGDVLMMMEEEDDHVDMSGLAEDFWVAKTEMM
PGVEVASHGVDQGLNLVHMLLACAEAVGCRDTKLADSLLAQIWASVSPWG
DSLQRVSYCFAMGLKSRLSLLQNVNINGTFNNDMMDVSVTSRDDKLEAFQ
LLNQTTPYIAFGFMVANEAICQAAQGKEDLHIIDLGMEHTLQWPSLIRTL
ASRXEGPPKKLRITGLVEDHNLFELEAGMRALVEEASSLGIPTEFXLISE
PVKPSLLTRENLDXREGEALFVNSIMHLHKYVKESRGSLKAILQALKKLG
PSVLTLVEQDANHNGPFFLGRFLESLHFYSAIFDSLEASLPRNSPQRMKI
ERQHFADEIRNIVAFEGLNRIERHERADQWRRQLGRAGFQVMGLKCTSQA
RMMLSVYGCDGYTLASEKGCLLLGWKGRPIMLASAWQAHSVSSS

mRNA from alignment at chr5:10558101..10559735+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000242829 ID=MDP0000242829; Name=MDP0000242829; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:10558101..10559735+ (Malus x domestica

mRNA from alignment at MDC015695.24:4590..6224+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000242829 ID=MDP0000242829; Name=MDP0000242829; organism=Malus x domestica; type=mRNA; length=1635bp; location=Sequence derived from: MDC015695.24:4590..6224+ (Malus x domestica
ATGGAAKATTTCAATGCTTGGCTCTCCTTCCCCTTGCATGAGAACCTCAA
CCATGATCTCGCCATTCGGAGGTTTTGTCCGGCGCGAGTTGAGCAAGAAC
AAGGAGGAGGTGGAGGTGGAGATGGAGAGTGGGATGAAATGCTAAATGAG
ATTGAGTTTTCTTCATCCTCTCACACCACTAGCACTCCATGCTTGCCTCC
TTCAGAGGTTGACGAATTCGTCGATAGCTTCATCAACATGGATCATTGCA
TTGATGATCATGACATTCAGTCCATGGAGAAACAACAAAGTAGTGGTAGT
ATTGAGTACTATGATCAAGATGGGATCGAGACATTTTCAATGGCGGATGA
TCTGTATGGAGATGTTCTGATGATGATGGAGGAAGAAGATGATCATGTGG
ATATGAGTGGCTTGGCGGAAGATTTTTGGGTTGCGAAAACTGAGATGATG
CCTGGGGTTGAGGTGGCGAGCCATGGTGTGGACCAAGGGCTTAACTTGGT
GCACATGTTGCTCGCTTGTGCCGAGGCTGTTGGCTGCAGGGACACCAAGC
TTGCAGACTCATTGCTCGCCCAAATTTGGGCATCTGTGAGCCCTTGGGGT
GACTCCTTGCAAAGAGTTTCATACTGCTTTGCAATGGGATTGAAATCAAG
GCTTTCGCTTCTTCAAAATGTCAACATAAATGGCACATTCAACAACGATA
TGATGGATGTTTCAGTGACCTCTAGGGACGACAAGTTGGAAGCTTTTCAA
CTCCTTAACCAAACAACTCCTTACATCGCTTTCGGTTTCATGGTTGCCAA
TGAAGCTATATGCCAAGCAGCGCAAGGGAAGGAAGACTTGCACATCATTG
ATTTGGGAATGGAGCACACTCTTCAGTGGCCTTCTTTGATYAGAACCCTA
GCATCGAGAYCCGAAGGCCCGCCTAAGAAGCTGCGAATCACCGGACTCGT
TGAAGATCACAATCTGTTTGAGCTTGAAGCTGGCATGAGAGCTCTGGTGG
AGGAGGCTAGCTCGCTAGGGATACCAACAGAATTTARTTTGATATCGGAG
CCGGTGAAACCATCACTCCTAACWAGAGAGAACCTAGACWTGAGAGAAGG
GGAAGCATTATTTGTCAATAGCATCATGCACTTGCATAAGTATGTCAAAG
ARAGTAGAGGCTCTCTGAAGGCAATTCTTCAAGCTCTGAAGAAATTAGGT
CCATCTGTGCTYACATTGGTAGAACAAGATGCAAACCACAACGGGCCATT
TTTCCTCGGGAGATTCCTCGAGTCTCTTCACTTTTACTCAGCAATTTTCG
ACTCCCTTGAGGCTAGCCTCCCACGAAACAGCCCTCAGAGGATGAAGATC
GAGAGGCAGCACTTCGCGGACGAAATCAGAAACATTGTTGCTTTTGAGGG
ATTAAATAGGATTGAGAGGCATGAGAGGGCAGACCAGTGGAGAAGGCAAT
TAGGGCGAGCCGGGTTTCAAGTGATGGGGTTGAAGTGTACAAGTCAAGCA
AGGATGATGCTATCTGTTTATGGCTGTGATGGCTACACTTTGGCTAGTGA
GAAGGGTTGTCTCCTCCTCGGGTGGAAAGGCAGGCCGATAATGCTGGCAT
CGGCATGGCAAGCGCACAGCGTGTCTTCCTCCTAG

Coding sequence (CDS) from alignment at MDC015695.24:4590..6224+

>MDP0000242829 ID=MDP0000242829; Name=MDP0000242829; organism=Malus x domestica; type=CDS; length=1635bp; location=Sequence derived from: MDC015695.24:4590..6224+ (Malus x domestica
ATGGAAKATTTCAATGCTTGGCTCTCCTTCCCCTTGCATGAGAACCTCAA
CCATGATCTCGCCATTCGGAGGTTTTGTCCGGCGCGAGTTGAGCAAGAAC
AAGGAGGAGGTGGAGGTGGAGATGGAGAGTGGGATGAAATGCTAAATGAG
ATTGAGTTTTCTTCATCCTCTCACACCACTAGCACTCCATGCTTGCCTCC
TTCAGAGGTTGACGAATTCGTCGATAGCTTCATCAACATGGATCATTGCA
TTGATGATCATGACATTCAGTCCATGGAGAAACAACAAAGTAGTGGTAGT
ATTGAGTACTATGATCAAGATGGGATCGAGACATTTTCAATGGCGGATGA
TCTGTATGGAGATGTTCTGATGATGATGGAGGAAGAAGATGATCATGTGG
ATATGAGTGGCTTGGCGGAAGATTTTTGGGTTGCGAAAACTGAGATGATG
CCTGGGGTTGAGGTGGCGAGCCATGGTGTGGACCAAGGGCTTAACTTGGT
GCACATGTTGCTCGCTTGTGCCGAGGCTGTTGGCTGCAGGGACACCAAGC
TTGCAGACTCATTGCTCGCCCAAATTTGGGCATCTGTGAGCCCTTGGGGT
GACTCCTTGCAAAGAGTTTCATACTGCTTTGCAATGGGATTGAAATCAAG
GCTTTCGCTTCTTCAAAATGTCAACATAAATGGCACATTCAACAACGATA
TGATGGATGTTTCAGTGACCTCTAGGGACGACAAGTTGGAAGCTTTTCAA
CTCCTTAACCAAACAACTCCTTACATCGCTTTCGGTTTCATGGTTGCCAA
TGAAGCTATATGCCAAGCAGCGCAAGGGAAGGAAGACTTGCACATCATTG
ATTTGGGAATGGAGCACACTCTTCAGTGGCCTTCTTTGATYAGAACCCTA
GCATCGAGAYCCGAAGGCCCGCCTAAGAAGCTGCGAATCACCGGACTCGT
TGAAGATCACAATCTGTTTGAGCTTGAAGCTGGCATGAGAGCTCTGGTGG
AGGAGGCTAGCTCGCTAGGGATACCAACAGAATTTARTTTGATATCGGAG
CCGGTGAAACCATCACTCCTAACWAGAGAGAACCTAGACWTGAGAGAAGG
GGAAGCATTATTTGTCAATAGCATCATGCACTTGCATAAGTATGTCAAAG
ARAGTAGAGGCTCTCTGAAGGCAATTCTTCAAGCTCTGAAGAAATTAGGT
CCATCTGTGCTYACATTGGTAGAACAAGATGCAAACCACAACGGGCCATT
TTTCCTCGGGAGATTCCTCGAGTCTCTTCACTTTTACTCAGCAATTTTCG
ACTCCCTTGAGGCTAGCCTCCCACGAAACAGCCCTCAGAGGATGAAGATC
GAGAGGCAGCACTTCGCGGACGAAATCAGAAACATTGTTGCTTTTGAGGG
ATTAAATAGGATTGAGAGGCATGAGAGGGCAGACCAGTGGAGAAGGCAAT
TAGGGCGAGCCGGGTTTCAAGTGATGGGGTTGAAGTGTACAAGTCAAGCA
AGGATGATGCTATCTGTTTATGGCTGTGATGGCTACACTTTGGCTAGTGA
GAAGGGTTGTCTCCTCCTCGGGTGGAAAGGCAGGCCGATAATGCTGGCAT
CGGCATGGCAAGCGCACAGCGTGTCTTCCTCCTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS