MDP0000230994, MDP0000230994 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000230994
Unique Name	MDP0000230994
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2770

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:15148360..15151129 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC014010.340	contig	MDC014010.340:43319..46088 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000230994_exon_1	MDP0000230994_exon_1	Malus x domestica	CDS
MDP0000230994_exon_2	MDP0000230994_exon_2	Malus x domestica	CDS
MDP0000230994_exon_3	MDP0000230994_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000230994	MDP0000230994	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 147..516 score: 3.2e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 121..495 score: 47
None	No IPR available	SEG	seg	seg	coord: 17..31 score: NAcoord: 68..76 score
None	No IPR available	SEG	seg	seg	coord: 25..33 score
None	No IPR available	SEG	seg	seg	coord: 18..40 score: NAcoord: 41..53 score
None	No IPR available	SEG	seg	seg	coord: 9..20 score
None	No IPR available	SEG	seg	seg	coord: 45..57 score
None	No IPR available	SEG	seg	seg	coord: 7..24 score
None	No IPR available	SEG	seg	seg	coord: 7..20 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:15148360..15151129-
mRNA from alignment at MDC014010.340:43319..46088-
coding sequence from alignment at MDC014010.340:43319..46088-

mRNA sequence

>MDP0000230994 ID=MDP0000230994; Name=MDP0000230994; organism=Malus x domestica; type=mRNA; length=2770bp
ATGGCTGATGGGACTGTGMATATAATCCAATCCCACCAACCTTGGATTAA
TTACCCCAACCCTAATGTCAATGGCTTCCAAAATAATCCCAACTCCGATC
CCAAGCCCGTCGAGAACCGGTTTATAAACTTGGAGAGGAGTGAACTATCT
CTGTGGGTGGAGCACATATCAAAACAGCTCATCGACGACTTGCCAGAACC
CGCCACAGCCGCCAACACCGCCGCCAATGACACGTTACAGACGTCTGAGG
ACTATTTTGTCCCGTCATCACTTTCCACAGACTTAAATAGTCCGAGGAAA
GTCCCACGGAGAAGCTATGGTGAGCATGAGCTTCATGAGCTCCAGCGGGG
CAATGAGCTTCAACTCCTTGCAGATAATAATAACGTAAGAGCAAGAGGAG
GGAATGATATGAGTAAGCTCGATGAGCATGGCTTAGCCCTAATCACCCTT
CTCTTCGAATGCGCAGTTGCCATCTCCGTTGACAACCTCCCCGAGGCCCA
TCGGATGCTCCTCGAGCTAACCCAAATGGCCTCTCCGTACGGGCCATCAT
GCGCTGAGCGCGTGGTGGCCTATTTCGCCAAGGCCATGGCTAGTAGGGTT
ATCAACTCATGGTTAGGCATTTCCTCTCCATTGGTCAACTACAAAAGCGT
TCATGGTGCTTTTCAAGTCTTCAACACCATCTCCCCTTTCATCAAATTTG
CCCACTTCACTTCCAACCAAGCCATCCTCGAGGCCTTTCACCACCACGAT
ATGGTTCACATTCTTGACCTCGACATCATGCAGGTACATATGGTTCGAAA
TTTCGATGGTACTTTACGGATAATACTTGCCTCCTTCCATTAGAATTAGA
CATTCCTACAGTCCTAGCTACCAATCACAGTTTAATGTGCTCATAAGATT
TTCTTTTTATATATTTAAGAAGAAATTAGGTTCTCATCCTTATTTTTTCT
ACTCCATTGATTAAAACATTATTCCTTTTCAAATTTTGATCAAGTCCTTT
AGTTTTAATAAACGTCATTAATTATTAAACAAAGAATTTACACGTCAAGA
TAATTAAGTTTTATTTTTAAATATAGTCATTTAGTGTTAGAAACGTTACA
TTTGGTATATTATATTTATGGCTAAACTTTTTATCATATATTTCTATTTC
TAATTTGTACCCATTTTTAATTTGCAACCCTTTTTTAAATTGTACCAATT
TTCTTTTAAATTTTAATTTGTACCCATATATTGATTTCTTTTTGTCCCTT
ATTTTTTAAACTTTTATTTGTACTCATAATTTTTTAACTTTTTATTTGTA
CCCGTAATTTATTTATAATGTACCCATTATTTTTTTTTACAAATGTACCA
CTTTGTTATATGTAAAATGTATCCCTATTTTTTTTTTGTAAGTACCATTT
TTTATGTAAAAGTACCCATTTTTTTAATGTAAAATCTATTTATTTTTTAA
TCTAAAATGTACCATTATTTTTTTAATATAAAATGTATCCATTGTTTTCT
ATATAAAATGTACCCACTCTTTTATGTAAATGTACCAAATATATATATAT
ATATATATATATATATATATATATATATATATATAATGTAGCCAAATTTT
ATTATATAAATGTACTCATTTTATAAAAATAAAAAAAAATAAAAAAATCC
AATTTTTTTTATAATCTAGGATGCACCCATAATCAATTATTATTATTATT
ATTTTTATCAAAACCCATAAGCAATTTTGAATAATTAAATTGGTAGTGTA
AATGAAAGAAAAAAAGGGGTTGAGTCTTTATTAGTATTTTTGCATTTCTT
TTATTATTATGTCATTTATGTAGCAAGAGAGGAACTTCAATAAAAAATCT
AAAATGCATAAGGTTTGAGCCTATAACAGTTAGGGACAAGGACTGCAACT
AAATTATCCCTATATTTAATGAGTTAKTTTTGTATATACGTCAAACTATG
ATTTTGCAAGAATAAGTTATTTCTCTCGTGTTATATAATTTTAACTAACT
TCGATGTATATTGTGTGCAGGGTTTGCAATGGCCAGCCTTGTTTCACATT
CTCGCCACACGCATGGAGGGTCCTCCACATGTGAGAATGACCGGCATGGG
CACATCATCGGAAATCCTGCTGGAGACCGGAAAGCAACTCTCAAGTTTTG
CAAGGAGACTCGGACTGTCATTCGAATTTCATCCAATTGTCAGGAAAGTT
GGTGAGGTAGATGCTTCCATGGTCCAAGTACGGCGAGGGGAGACCCTCGC
CGTGCACTGGCTGCAACACTCGCTGTACGATGCAACTGGCCCCGATTGGA
AAGCGATGAGATTCATTGAAGAATTAGCACCAAGGATTATCACGCTAGTA
GAGCAAGACATGTCACATAGTGGCTCATTTTTGGACCGTTTTGTTGGGTC
GTTACATTACTACTCGACGATGTTCGATTCACTAGAATCATACTTGCCTA
GTGACAACCCTAACCGGCACAAGGTGGAGCACTGCCTGTTTTATAGAGAA
ATCAACAACATATTGGCGATTGGAGGGCCGGCGAGAAGCGGTGAAGACAA
GTTCCGGCAGTGGAGAAGTGAGCTTGGGGCCAGAAGTGAGTTCATGCAAG
TAGGGATGAGTGGGAATTCAATGGCACAAGCACAGTTGATATTAAATATG
TTCCCTCCTACACATGGGTATAGCCTTGTGCAAGGAGATGGCACTATTAG
GCTTGGGTGGAAGGATACTAGTTTGTATGTTGCTTCTGCATGGACATGCT
CTCATGCTTCTAAGATATAA

protein sequence of MDP0000230994

>MDP0000230994 ID=MDP0000230994; Name=MDP0000230994; organism=Malus x domestica; type=polypeptide; length=523bp
MADGTVXIIQSHQPWINYPNPNVNGFQNNPNSDPKPVENRFINLERSELS
LWVEHISKQLIDDLPEPATAANTAANDTLQTSEDYFVPSSLSTDLNSPRK
VPRRSYGEHELHELQRGNELQLLADNNNVRARGGNDMSKLDEHGLALITL
LFECAVAISVDNLPEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRV
INSWLGISSPLVNYKSVHGAFQVFNTISPFIKFAHFTSNQAILEAFHHHD
MVHILDLDIMQQERNFNKKSKMHKGLQWPALFHILATRMEGPPHVRMTGM
GTSSEILLETGKQLSSFARRLGLSFEFHPIVRKVGEVDASMVQVRRGETL
AVHWLQHSLYDATGPDWKAMRFIEELAPRIITLVEQDMSHSGSFLDRFVG
SLHYYSTMFDSLESYLPSDNPNRHKVEHCLFYREINNILAIGGPARSGED
KFRQWRSELGARSEFMQVGMSGNSMAQAQLILNMFPPTHGYSLVQGDGTI
RLGWKDTSLYVASAWTCSHASKI

mRNA from alignment at chr5:15148360..15151129-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000230994 ID=MDP0000230994; Name=MDP0000230994; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:15148360..15151129- (Malus x domestica

mRNA from alignment at MDC014010.340:43319..46088-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000230994 ID=MDP0000230994; Name=MDP0000230994; organism=Malus x domestica; type=mRNA; length=2770bp; location=Sequence derived from: MDC014010.340:43319..46088- (Malus x domestica
ATGGCTGATGGGACTGTGMATATAATCCAATCCCACCAACCTTGGATTAA
TTACCCCAACCCTAATGTCAATGGCTTCCAAAATAATCCCAACTCCGATC
CCAAGCCCGTCGAGAACCGGTTTATAAACTTGGAGAGGAGTGAACTATCT
CTGTGGGTGGAGCACATATCAAAACAGCTCATCGACGACTTGCCAGAACC
CGCCACAGCCGCCAACACCGCCGCCAATGACACGTTACAGACGTCTGAGG
ACTATTTTGTCCCGTCATCACTTTCCACAGACTTAAATAGTCCGAGGAAA
GTCCCACGGAGAAGCTATGGTGAGCATGAGCTTCATGAGCTCCAGCGGGG
CAATGAGCTTCAACTCCTTGCAGATAATAATAACGTAAGAGCAAGAGGAG
GGAATGATATGAGTAAGCTCGATGAGCATGGCTTAGCCCTAATCACCCTT
CTCTTCGAATGCGCAGTTGCCATCTCCGTTGACAACCTCCCCGAGGCCCA
TCGGATGCTCCTCGAGCTAACCCAAATGGCCTCTCCGTACGGGCCATCAT
GCGCTGAGCGCGTGGTGGCCTATTTCGCCAAGGCCATGGCTAGTAGGGTT
ATCAACTCATGGTTAGGCATTTCCTCTCCATTGGTCAACTACAAAAGCGT
TCATGGTGCTTTTCAAGTCTTCAACACCATCTCCCCTTTCATCAAATTTG
CCCACTTCACTTCCAACCAAGCCATCCTCGAGGCCTTTCACCACCACGAT
ATGGTTCACATTCTTGACCTCGACATCATGCAGGTACATATGGTTCGAAA
TTTCGATGGTACTTTACGGATAATACTTGCCTCCTTCCATTAGAATTAGA
CATTCCTACAGTCCTAGCTACCAATCACAGTTTAATGTGCTCATAAGATT
TTCTTTTTATATATTTAAGAAGAAATTAGGTTCTCATCCTTATTTTTTCT
ACTCCATTGATTAAAACATTATTCCTTTTCAAATTTTGATCAAGTCCTTT
AGTTTTAATAAACGTCATTAATTATTAAACAAAGAATTTACACGTCAAGA
TAATTAAGTTTTATTTTTAAATATAGTCATTTAGTGTTAGAAACGTTACA
TTTGGTATATTATATTTATGGCTAAACTTTTTATCATATATTTCTATTTC
TAATTTGTACCCATTTTTAATTTGCAACCCTTTTTTAAATTGTACCAATT
TTCTTTTAAATTTTAATTTGTACCCATATATTGATTTCTTTTTGTCCCTT
ATTTTTTAAACTTTTATTTGTACTCATAATTTTTTAACTTTTTATTTGTA
CCCGTAATTTATTTATAATGTACCCATTATTTTTTTTTACAAATGTACCA
CTTTGTTATATGTAAAATGTATCCCTATTTTTTTTTTGTAAGTACCATTT
TTTATGTAAAAGTACCCATTTTTTTAATGTAAAATCTATTTATTTTTTAA
TCTAAAATGTACCATTATTTTTTTAATATAAAATGTATCCATTGTTTTCT
ATATAAAATGTACCCACTCTTTTATGTAAATGTACCAAATATATATATAT
ATATATATATATATATATATATATATATATATATAATGTAGCCAAATTTT
ATTATATAAATGTACTCATTTTATAAAAATAAAAAAAAATAAAAAAATCC
AATTTTTTTTATAATCTAGGATGCACCCATAATCAATTATTATTATTATT
ATTTTTATCAAAACCCATAAGCAATTTTGAATAATTAAATTGGTAGTGTA
AATGAAAGAAAAAAAGGGGTTGAGTCTTTATTAGTATTTTTGCATTTCTT
TTATTATTATGTCATTTATGTAGCAAGAGAGGAACTTCAATAAAAAATCT
AAAATGCATAAGGTTTGAGCCTATAACAGTTAGGGACAAGGACTGCAACT
AAATTATCCCTATATTTAATGAGTTAKTTTTGTATATACGTCAAACTATG
ATTTTGCAAGAATAAGTTATTTCTCTCGTGTTATATAATTTTAACTAACT
TCGATGTATATTGTGTGCAGGGTTTGCAATGGCCAGCCTTGTTTCACATT
CTCGCCACACGCATGGAGGGTCCTCCACATGTGAGAATGACCGGCATGGG
CACATCATCGGAAATCCTGCTGGAGACCGGAAAGCAACTCTCAAGTTTTG
CAAGGAGACTCGGACTGTCATTCGAATTTCATCCAATTGTCAGGAAAGTT
GGTGAGGTAGATGCTTCCATGGTCCAAGTACGGCGAGGGGAGACCCTCGC
CGTGCACTGGCTGCAACACTCGCTGTACGATGCAACTGGCCCCGATTGGA
AAGCGATGAGATTCATTGAAGAATTAGCACCAAGGATTATCACGCTAGTA
GAGCAAGACATGTCACATAGTGGCTCATTTTTGGACCGTTTTGTTGGGTC
GTTACATTACTACTCGACGATGTTCGATTCACTAGAATCATACTTGCCTA
GTGACAACCCTAACCGGCACAAGGTGGAGCACTGCCTGTTTTATAGAGAA
ATCAACAACATATTGGCGATTGGAGGGCCGGCGAGAAGCGGTGAAGACAA
GTTCCGGCAGTGGAGAAGTGAGCTTGGGGCCAGAAGTGAGTTCATGCAAG
TAGGGATGAGTGGGAATTCAATGGCACAAGCACAGTTGATATTAAATATG
TTCCCTCCTACACATGGGTATAGCCTTGTGCAAGGAGATGGCACTATTAG
GCTTGGGTGGAAGGATACTAGTTTGTATGTTGCTTCTGCATGGACATGCT
CTCATGCTTCTAAGATATAA

Coding sequence (CDS) from alignment at MDC014010.340:43319..46088-

>MDP0000230994 ID=MDP0000230994; Name=MDP0000230994; organism=Malus x domestica; type=CDS; length=1572bp; location=Sequence derived from: MDC014010.340:43319..46088- (Malus x domestica
ATGGCTGATGGGACTGTGMATATAATCCAATCCCACCAACCTTGGATTAA
TTACCCCAACCCTAATGTCAATGGCTTCCAAAATAATCCCAACTCCGATC
CCAAGCCCGTCGAGAACCGGTTTATAAACTTGGAGAGGAGTGAACTATCT
CTGTGGGTGGAGCACATATCAAAACAGCTCATCGACGACTTGCCAGAACC
CGCCACAGCCGCCAACACCGCCGCCAATGACACGTTACAGACGTCTGAGG
ACTATTTTGTCCCGTCATCACTTTCCACAGACTTAAATAGTCCGAGGAAA
GTCCCACGGAGAAGCTATGGTGAGCATGAGCTTCATGAGCTCCAGCGGGG
CAATGAGCTTCAACTCCTTGCAGATAATAATAACGTAAGAGCAAGAGGAG
GGAATGATATGAGTAAGCTCGATGAGCATGGCTTAGCCCTAATCACCCTT
CTCTTCGAATGCGCAGTTGCCATCTCCGTTGACAACCTCCCCGAGGCCCA
TCGGATGCTCCTCGAGCTAACCCAAATGGCCTCTCCGTACGGGCCATCAT
GCGCTGAGCGCGTGGTGGCCTATTTCGCCAAGGCCATGGCTAGTAGGGTT
ATCAACTCATGGTTAGGCATTTCCTCTCCATTGGTCAACTACAAAAGCGT
TCATGGTGCTTTTCAAGTCTTCAACACCATCTCCCCTTTCATCAAATTTG
CCCACTTCACTTCCAACCAAGCCATCCTCGAGGCCTTTCACCACCACGAT
ATGGTTCACATTCTTGACCTCGACATCATGCAGCAAGAGAGGAACTTCAA
TAAAAAATCTAAAATGCATAAGGGTTTGCAATGGCCAGCCTTGTTTCACA
TTCTCGCCACACGCATGGAGGGTCCTCCACATGTGAGAATGACCGGCATG
GGCACATCATCGGAAATCCTGCTGGAGACCGGAAAGCAACTCTCAAGTTT
TGCAAGGAGACTCGGACTGTCATTCGAATTTCATCCAATTGTCAGGAAAG
TTGGTGAGGTAGATGCTTCCATGGTCCAAGTACGGCGAGGGGAGACCCTC
GCCGTGCACTGGCTGCAACACTCGCTGTACGATGCAACTGGCCCCGATTG
GAAAGCGATGAGATTCATTGAAGAATTAGCACCAAGGATTATCACGCTAG
TAGAGCAAGACATGTCACATAGTGGCTCATTTTTGGACCGTTTTGTTGGG
TCGTTACATTACTACTCGACGATGTTCGATTCACTAGAATCATACTTGCC
TAGTGACAACCCTAACCGGCACAAGGTGGAGCACTGCCTGTTTTATAGAG
AAATCAACAACATATTGGCGATTGGAGGGCCGGCGAGAAGCGGTGAAGAC
AAGTTCCGGCAGTGGAGAAGTGAGCTTGGGGCCAGAAGTGAGTTCATGCA
AGTAGGGATGAGTGGGAATTCAATGGCACAAGCACAGTTGATATTAAATA
TGTTCCCTCCTACACATGGGTATAGCCTTGTGCAAGGAGATGGCACTATT
AGGCTTGGGTGGAAGGATACTAGTTTGTATGTTGCTTCTGCATGGACATG
CTCTCATGCTTCTAAGATATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS