MDP0000205622, MDP0000205622 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000205622
Unique Name	MDP0000205622
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2991

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr3	chromosome	chr3:25473680..25476670 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC016527.227	contig	MDC016527.227:39505..42495 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000205622_exon_1	MDP0000205622_exon_1	Malus x domestica	CDS
MDP0000205622_exon_2	MDP0000205622_exon_2	Malus x domestica	CDS
MDP0000205622_exon_3	MDP0000205622_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000205622	MDP0000205622	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 298..667 score: 6.7e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 272..649 score: 64
None	No IPR available	SEG	seg	seg	coord: 35..49 score
None	No IPR available	SEG	seg	seg	coord: 33..38 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:25473680..25476670-
mRNA from alignment at MDC016527.227:39505..42495-
coding sequence from alignment at MDC016527.227:39505..42495-

mRNA sequence

>MDP0000205622 ID=MDP0000205622; Name=MDP0000205622; organism=Malus x domestica; type=mRNA; length=2991bp
ATGTTCTGTTGTTCAAACATTGCAACGTATGGTCGGCGCCAACACCTCAC
CGTCTCTTTCTGCTATATATACCWTGGAAGCCTAGCTTCTGCTTCTTTCG
AAGACTCGGCGAATTCAGAGCTCCCACRACTTGACGAACAGGTTCTTGGA
CCAAACCAGAACTTACCCAGAAGAGAAAATACAGGTATTTGTTCATAGAT
TTGTATATCTTTGAATTATTGGTTTAAGTATAATTTGTTTGGTAGCTGAG
GAAGTTGAGTTGAAAGGAAAGTTGGGWGGAATCTGATTTCTTTTGAATCT
TTGTGTAGTTTGTTGATTYGGGGTTTTGGGGAAAAGGGGAAATCCGAGCT
TGTGGCTCKTATTGGGCTTCATTGATTGGARGGTGTAKTTGATTCGTGGC
GTATAGGGTGAGGAAATCATGGGTTTTTCTTATTTTGATCTGTTTTCTAT
CACTTTCTTGAGAACAAACAGATGGTGAGTGGATTTGGAGCGTCTTGTGA
TTTGAAGTGTTGGGTTTTGTAAAATCAGTTCAACTGGATATGGTTTTGAT
GGCTTTTGAGTATTGATTTTTGGTCCCAAAATGGAAAATTACTCCAAATT
TATTCAAATGGAAGTTAAATTTTATAAATTGTGCACCTTGACATAGTTTG
TCAATCCTGAAGCTATGTTCKCCTGGTGTCAGYTCAATGGATCTTCTATT
TTTCGATTGATGAGGCCGATTAGTCTCGCCCTGTTTGATTCAATCTCCAT
TTGGTTATCCTTTGTTTGGTATCTGCTCTGTGACTAACATCACTCGCTGA
AGCAATATTCCGTTACATCGGTTGAATAGAGCKGCCCATTTCGTTGCTTC
CTATGCTTGGGTAGYTCAAGTACTCTGGGATGCAGATCCTCCTGAGTCCT
KAGTGGTTGCTTCCTGCTCTTTATTCTGRTTAATATCCGTTTAAGATTTA
AAACTTTTCTTGGTGTTTATTGATTCGATAATACATTCAGGCAAGACAGA
TTGTGGTTTGGTTATAATTTCTGCTTTTCAAGTTAGTATATGCAATTTTT
CCCTCAGAATCTCTAGTTAATTGGCCTTTTTCTGTATCAATATTGCAGGT
TTATTTTGTTATCTTGAAAGTTCACAAAGGTTGCCAAGAGTGTCTTTTGG
GGAAAGCACAGAGCTTGATCCTATTCTGGTTGATAAGTTATACAATCGGA
TTTCTTGTCACATGGAATAGCTGATGCCAATCTCATAGCATGGACCAGCA
TTTTGGATTTGGTGCGACTGGTGCAGGATTGTCATATACAGCTCCACTTC
CCACTGTTCGGTCTTTACCTAAAAGGTTACTTGGGTCGTTGAAATTTGAT
ATTAAGAACTCACCAAATACACCCTTTTCGACTCACTTTGATTCTGATAC
TCTTACGACACTGAGCGACAGTCAGGAGCAGCACAGCTCCCCGGAGAATC
TCTCAGGAGCCACCCCCTCCTGTACCTCTTCATTTGAAACAAACAGTTAC
GTTAATCAGTTAAGCTTAAGCCCTTCGGTGGACTGTAGTCGAGACAGTCT
GCAGGTCTATTCTGGTAGGACTTCTTCCTTAAAGGATGCAAATAGTAGCC
AGAACATAAAACAAACTTTGCAGGAATTGGAGAGTGCTTTAATGGGGCCT
GACGATGAGGAAGAAGAAGTCACCACACCAAACACTTCTAGTGGAGAAAG
TAGCAGGCAGCAGACCCAGAGGTCCATGTCATGGATCCAGGAGCACCAGG
GTTCAAACCCTGTTCAACGGCAGACATCCTTTGTTTCTCGGCAAAGGCAG
TTGGCTGAAGCTCAGTTTGAGAAACGTCATAAAGTGATAGATGAAGCATC
TCTAAAGGGTTTGCCAGCAAGTAATCTGAAGGAATTGCTGATTGCATGTG
CTGGAGCTCTCTCCAACAACAATGAGGAAAGTTTCGAAAAATTGATTGAA
AAGGCTAGAGGAGCTGTGTCTATCGGTGGAGTACCAATCCAGCGACTTGG
AGCTTACTTGATAGAAGGGCTGGTGGCCAGGAAGGAGGCATCAGGTGCCA
ATATTTACCACGCCCTTAGGTGTAGAGAGCCTGAAGGCAACGACTTGCTG
TCCTATATGCAGATTCTGTATGAGATCTGCCCATACTTAAAGTTTGGTTA
CATGGCAGCCAACGGGGCCATTGCTGAGGCATGCAGAAATGAGGACCGCA
TCCACATTATAGACTTCCAGATAGCTCAGGGAACCCAGTGGGTTACTCTC
CTTCAAGCACTTGCAGCAAGACCCAGTGGGGCTCCCCATGTACGAATTAC
AGGTATCGATGATCCTGTTTCTAAACATGCCCGTGGTGATGGGTTGGAGG
CAGTAGGGAGACGGTTGAAAGCCATCTCAGACAAATTTAACATCCCAGTT
GAATTTCATGGAGTCCCAGTTTTCGCACCTGATGTCACACGGGACATGCT
TGATGTCAGGCCTGGAGAGGCTCTTGCTGTGAACTTCCCTCTGCAGCTTC
ATCACACACCAGATGAAAGCGTTGATGAGAACAATCCGAGGGATGGGCTG
CTGAGAACAGTGAGGTCTCTAAATCCAAAGGTAACCACTTTGGTGGAACA
AGAATCAAACACGAACACAACCCCCTTTTTCAATAGGTTTGTGGAAACTC
TTGAATACTACTTGGCGATGTTCGAGTCTATTGATGTGACCCTCCCAAGG
AACAGCAAGGAAAGAATCAATGTGGAGATGCATTGTTTGGCAAGAGATAT
TGTGAATGTCATTGCTTGCGAGGGGAAGGAAAGGGTGGAACGTCACGAGC
TCTTTGGCAAGTGGAAATCCAGGTTGACAATGGCAGGGTTTCAGCAGTAC
CCGTTGAGCTCATATGTGAACTCTGTCATTGGGGGTCTGCTGAGGTGTTA
CTCGGAGCATTATACACTGGTTGAGAAGGACGGTGCTATGCTTTTGGGAT
GGAAGGACAGGAACTTAATATCAGCTTCTGCCTGGCATTGA

protein sequence of MDP0000205622

>MDP0000205622 ID=MDP0000205622; Name=MDP0000205622; organism=Malus x domestica; type=polypeptide; length=668bp
MFCCSNIATYGRRQHLTVSFCYIYXGSLASASFEDSANSELPXLDEQVLG
PNQNLPRRENTGLFCYLESSQRLPRVSFGESTELDPILHFGFGATGAGLS
YTAPLPTVRSLPKRLLGSLKFDIKNSPNTPFSTHFDSDTLTTLSDSQEQH
SSPENLSGATPSCTSSFETNSYVNQLSLSPSVDCSRDSLQVYSGRTSSLK
DANSSQNIKQTLQELESALMGPDDEEEEVTTPNTSSGESSRQQTQRSMSW
IQEHQGSNPVQRQTSFVSRQRQLAEAQFEKRHKVIDEASLKGLPASNLKE
LLIACAGALSNNNEESFEKLIEKARGAVSIGGVPIQRLGAYLIEGLVARK
EASGANIYHALRCREPEGNDLLSYMQILYEICPYLKFGYMAANGAIAEAC
RNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKHAR
GDGLEAVGRRLKAISDKFNIPVEFHGVPVFAPDVTRDMLDVRPGEALAVN
FPLQLHHTPDESVDENNPRDGLLRTVRSLNPKVTTLVEQESNTNTTPFFN
RFVETLEYYLAMFESIDVTLPRNSKERINVEMHCLARDIVNVIACEGKER
VERHELFGKWKSRLTMAGFQQYPLSSYVNSVIGGLLRCYSEHYTLVEKDG
AMLLGWKDRNLISASAWH

mRNA from alignment at chr3:25473680..25476670-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000205622 ID=MDP0000205622; Name=MDP0000205622; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr3:25473680..25476670- (Malus x domestica

mRNA from alignment at MDC016527.227:39505..42495-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000205622 ID=MDP0000205622; Name=MDP0000205622; organism=Malus x domestica; type=mRNA; length=2991bp; location=Sequence derived from: MDC016527.227:39505..42495- (Malus x domestica
ATGTTCTGTTGTTCAAACATTGCAACGTATGGTCGGCGCCAACACCTCAC
CGTCTCTTTCTGCTATATATACCWTGGAAGCCTAGCTTCTGCTTCTTTCG
AAGACTCGGCGAATTCAGAGCTCCCACRACTTGACGAACAGGTTCTTGGA
CCAAACCAGAACTTACCCAGAAGAGAAAATACAGGTATTTGTTCATAGAT
TTGTATATCTTTGAATTATTGGTTTAAGTATAATTTGTTTGGTAGCTGAG
GAAGTTGAGTTGAAAGGAAAGTTGGGWGGAATCTGATTTCTTTTGAATCT
TTGTGTAGTTTGTTGATTYGGGGTTTTGGGGAAAAGGGGAAATCCGAGCT
TGTGGCTCKTATTGGGCTTCATTGATTGGARGGTGTAKTTGATTCGTGGC
GTATAGGGTGAGGAAATCATGGGTTTTTCTTATTTTGATCTGTTTTCTAT
CACTTTCTTGAGAACAAACAGATGGTGAGTGGATTTGGAGCGTCTTGTGA
TTTGAAGTGTTGGGTTTTGTAAAATCAGTTCAACTGGATATGGTTTTGAT
GGCTTTTGAGTATTGATTTTTGGTCCCAAAATGGAAAATTACTCCAAATT
TATTCAAATGGAAGTTAAATTTTATAAATTGTGCACCTTGACATAGTTTG
TCAATCCTGAAGCTATGTTCKCCTGGTGTCAGYTCAATGGATCTTCTATT
TTTCGATTGATGAGGCCGATTAGTCTCGCCCTGTTTGATTCAATCTCCAT
TTGGTTATCCTTTGTTTGGTATCTGCTCTGTGACTAACATCACTCGCTGA
AGCAATATTCCGTTACATCGGTTGAATAGAGCKGCCCATTTCGTTGCTTC
CTATGCTTGGGTAGYTCAAGTACTCTGGGATGCAGATCCTCCTGAGTCCT
KAGTGGTTGCTTCCTGCTCTTTATTCTGRTTAATATCCGTTTAAGATTTA
AAACTTTTCTTGGTGTTTATTGATTCGATAATACATTCAGGCAAGACAGA
TTGTGGTTTGGTTATAATTTCTGCTTTTCAAGTTAGTATATGCAATTTTT
CCCTCAGAATCTCTAGTTAATTGGCCTTTTTCTGTATCAATATTGCAGGT
TTATTTTGTTATCTTGAAAGTTCACAAAGGTTGCCAAGAGTGTCTTTTGG
GGAAAGCACAGAGCTTGATCCTATTCTGGTTGATAAGTTATACAATCGGA
TTTCTTGTCACATGGAATAGCTGATGCCAATCTCATAGCATGGACCAGCA
TTTTGGATTTGGTGCGACTGGTGCAGGATTGTCATATACAGCTCCACTTC
CCACTGTTCGGTCTTTACCTAAAAGGTTACTTGGGTCGTTGAAATTTGAT
ATTAAGAACTCACCAAATACACCCTTTTCGACTCACTTTGATTCTGATAC
TCTTACGACACTGAGCGACAGTCAGGAGCAGCACAGCTCCCCGGAGAATC
TCTCAGGAGCCACCCCCTCCTGTACCTCTTCATTTGAAACAAACAGTTAC
GTTAATCAGTTAAGCTTAAGCCCTTCGGTGGACTGTAGTCGAGACAGTCT
GCAGGTCTATTCTGGTAGGACTTCTTCCTTAAAGGATGCAAATAGTAGCC
AGAACATAAAACAAACTTTGCAGGAATTGGAGAGTGCTTTAATGGGGCCT
GACGATGAGGAAGAAGAAGTCACCACACCAAACACTTCTAGTGGAGAAAG
TAGCAGGCAGCAGACCCAGAGGTCCATGTCATGGATCCAGGAGCACCAGG
GTTCAAACCCTGTTCAACGGCAGACATCCTTTGTTTCTCGGCAAAGGCAG
TTGGCTGAAGCTCAGTTTGAGAAACGTCATAAAGTGATAGATGAAGCATC
TCTAAAGGGTTTGCCAGCAAGTAATCTGAAGGAATTGCTGATTGCATGTG
CTGGAGCTCTCTCCAACAACAATGAGGAAAGTTTCGAAAAATTGATTGAA
AAGGCTAGAGGAGCTGTGTCTATCGGTGGAGTACCAATCCAGCGACTTGG
AGCTTACTTGATAGAAGGGCTGGTGGCCAGGAAGGAGGCATCAGGTGCCA
ATATTTACCACGCCCTTAGGTGTAGAGAGCCTGAAGGCAACGACTTGCTG
TCCTATATGCAGATTCTGTATGAGATCTGCCCATACTTAAAGTTTGGTTA
CATGGCAGCCAACGGGGCCATTGCTGAGGCATGCAGAAATGAGGACCGCA
TCCACATTATAGACTTCCAGATAGCTCAGGGAACCCAGTGGGTTACTCTC
CTTCAAGCACTTGCAGCAAGACCCAGTGGGGCTCCCCATGTACGAATTAC
AGGTATCGATGATCCTGTTTCTAAACATGCCCGTGGTGATGGGTTGGAGG
CAGTAGGGAGACGGTTGAAAGCCATCTCAGACAAATTTAACATCCCAGTT
GAATTTCATGGAGTCCCAGTTTTCGCACCTGATGTCACACGGGACATGCT
TGATGTCAGGCCTGGAGAGGCTCTTGCTGTGAACTTCCCTCTGCAGCTTC
ATCACACACCAGATGAAAGCGTTGATGAGAACAATCCGAGGGATGGGCTG
CTGAGAACAGTGAGGTCTCTAAATCCAAAGGTAACCACTTTGGTGGAACA
AGAATCAAACACGAACACAACCCCCTTTTTCAATAGGTTTGTGGAAACTC
TTGAATACTACTTGGCGATGTTCGAGTCTATTGATGTGACCCTCCCAAGG
AACAGCAAGGAAAGAATCAATGTGGAGATGCATTGTTTGGCAAGAGATAT
TGTGAATGTCATTGCTTGCGAGGGGAAGGAAAGGGTGGAACGTCACGAGC
TCTTTGGCAAGTGGAAATCCAGGTTGACAATGGCAGGGTTTCAGCAGTAC
CCGTTGAGCTCATATGTGAACTCTGTCATTGGGGGTCTGCTGAGGTGTTA
CTCGGAGCATTATACACTGGTTGAGAAGGACGGTGCTATGCTTTTGGGAT
GGAAGGACAGGAACTTAATATCAGCTTCTGCCTGGCATTGA

Coding sequence (CDS) from alignment at MDC016527.227:39505..42495-

>MDP0000205622 ID=MDP0000205622; Name=MDP0000205622; organism=Malus x domestica; type=CDS; length=2007bp; location=Sequence derived from: MDC016527.227:39505..42495- (Malus x domestica
ATGTTCTGTTGTTCAAACATTGCAACGTATGGTCGGCGCCAACACCTCAC
CGTCTCTTTCTGCTATATATACCWTGGAAGCCTAGCTTCTGCTTCTTTCG
AAGACTCGGCGAATTCAGAGCTCCCACRACTTGACGAACAGGTTCTTGGA
CCAAACCAGAACTTACCCAGAAGAGAAAATACAGGTTTATTTTGTTATCT
TGAAAGTTCACAAAGGTTGCCAAGAGTGTCTTTTGGGGAAAGCACAGAGC
TTGATCCTATTCTGCATTTTGGATTTGGTGCGACTGGTGCAGGATTGTCA
TATACAGCTCCACTTCCCACTGTTCGGTCTTTACCTAAAAGGTTACTTGG
GTCGTTGAAATTTGATATTAAGAACTCACCAAATACACCCTTTTCGACTC
ACTTTGATTCTGATACTCTTACGACACTGAGCGACAGTCAGGAGCAGCAC
AGCTCCCCGGAGAATCTCTCAGGAGCCACCCCCTCCTGTACCTCTTCATT
TGAAACAAACAGTTACGTTAATCAGTTAAGCTTAAGCCCTTCGGTGGACT
GTAGTCGAGACAGTCTGCAGGTCTATTCTGGTAGGACTTCTTCCTTAAAG
GATGCAAATAGTAGCCAGAACATAAAACAAACTTTGCAGGAATTGGAGAG
TGCTTTAATGGGGCCTGACGATGAGGAAGAAGAAGTCACCACACCAAACA
CTTCTAGTGGAGAAAGTAGCAGGCAGCAGACCCAGAGGTCCATGTCATGG
ATCCAGGAGCACCAGGGTTCAAACCCTGTTCAACGGCAGACATCCTTTGT
TTCTCGGCAAAGGCAGTTGGCTGAAGCTCAGTTTGAGAAACGTCATAAAG
TGATAGATGAAGCATCTCTAAAGGGTTTGCCAGCAAGTAATCTGAAGGAA
TTGCTGATTGCATGTGCTGGAGCTCTCTCCAACAACAATGAGGAAAGTTT
CGAAAAATTGATTGAAAAGGCTAGAGGAGCTGTGTCTATCGGTGGAGTAC
CAATCCAGCGACTTGGAGCTTACTTGATAGAAGGGCTGGTGGCCAGGAAG
GAGGCATCAGGTGCCAATATTTACCACGCCCTTAGGTGTAGAGAGCCTGA
AGGCAACGACTTGCTGTCCTATATGCAGATTCTGTATGAGATCTGCCCAT
ACTTAAAGTTTGGTTACATGGCAGCCAACGGGGCCATTGCTGAGGCATGC
AGAAATGAGGACCGCATCCACATTATAGACTTCCAGATAGCTCAGGGAAC
CCAGTGGGTTACTCTCCTTCAAGCACTTGCAGCAAGACCCAGTGGGGCTC
CCCATGTACGAATTACAGGTATCGATGATCCTGTTTCTAAACATGCCCGT
GGTGATGGGTTGGAGGCAGTAGGGAGACGGTTGAAAGCCATCTCAGACAA
ATTTAACATCCCAGTTGAATTTCATGGAGTCCCAGTTTTCGCACCTGATG
TCACACGGGACATGCTTGATGTCAGGCCTGGAGAGGCTCTTGCTGTGAAC
TTCCCTCTGCAGCTTCATCACACACCAGATGAAAGCGTTGATGAGAACAA
TCCGAGGGATGGGCTGCTGAGAACAGTGAGGTCTCTAAATCCAAAGGTAA
CCACTTTGGTGGAACAAGAATCAAACACGAACACAACCCCCTTTTTCAAT
AGGTTTGTGGAAACTCTTGAATACTACTTGGCGATGTTCGAGTCTATTGA
TGTGACCCTCCCAAGGAACAGCAAGGAAAGAATCAATGTGGAGATGCATT
GTTTGGCAAGAGATATTGTGAATGTCATTGCTTGCGAGGGGAAGGAAAGG
GTGGAACGTCACGAGCTCTTTGGCAAGTGGAAATCCAGGTTGACAATGGC
AGGGTTTCAGCAGTACCCGTTGAGCTCATATGTGAACTCTGTCATTGGGG
GTCTGCTGAGGTGTTACTCGGAGCATTATACACTGGTTGAGAAGGACGGT
GCTATGCTTTTGGGATGGAAGGACAGGAACTTAATATCAGCTTCTGCCTG
GCATTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS