MDP0000181482, MDP0000181482 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000181482
Unique Name	MDP0000181482
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2460

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr9	chromosome	chr9:29373931..29376390 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC006390.451	contig	MDC006390.451:20117..22576 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000181482_exon_1	MDP0000181482_exon_1	Malus x domestica	CDS
MDP0000181482_exon_2	MDP0000181482_exon_2	Malus x domestica	CDS
MDP0000181482_exon_3	MDP0000181482_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000181482	MDP0000181482	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 216..574 score: 2.2e
IPR005202	Transcription factor GRAS	PROFILE	PS50985	GRAS	coord: 190..553 score: 66
IPR021914	Transcriptional factor DELLA, N-terminal	PFAM	PF12041	DELLA	coord: 49..118 score: 1.6
None	No IPR available	COIL	coil	coiled-coil	coord: 64..85 score
None	No IPR available	SEG	seg	seg	coord: 17..27 score: NAcoord: 619..631 score
None	No IPR available	SEG	seg	seg	coord: 31..51 score
None	No IPR available	SEG	seg	seg	coord: 2..15 score: NAcoord: 22..40 score
None	No IPR available	SEG	seg	seg	coord: 11..22 score
None	No IPR available	SEG	seg	seg	coord: 6..23 score
None	No IPR available	SEG	seg	seg	coord: 43..58 score: NAcoord: 72..78 score
None	No IPR available	SEG	seg	seg	coord: 2..32 score
None	No IPR available	SEG	seg	seg	coord: 1..17 score: NAcoord: 24..35 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:29373931..29376390+
mRNA from alignment at MDC006390.451:20117..22576+
coding sequence from alignment at MDC006390.451:20117..22576+

mRNA sequence

>MDP0000181482 ID=MDP0000181482; Name=MDP0000181482; organism=Malus x domestica; type=mRNA; length=2460bp
ATGAAGAGAGAACACTGCCATAGCTCTGCAACTGCAAGTCAGAATAATTC
CAAACSAGAATACTCATCACYGCCGTCTTCCGCCCTGAACGGCAAGGCCA
AGATTTGGGAAGATGAACAAGGCTACAGCGGCGGCGGCGACATGGACGAG
CTGCTTGCCGTTTTGGGATACAAGGTTCGGACCGACGACATGGCCGACGT
GGCCGAGAAGCTCGAGCAGCTCGAGATGGTCATGGGGTCGGCTCAGGAAG
ATGGGGTTTCTCAGCTCTCTGACACCGTCCATTACAACCCGTCCGATCTC
TCCGGGTGGGTCCAAAGCATGCTCTCTGAGCTCAACACCGGCGACGATAT
GCCCTCAATCAACGGCCCTCTTCTCGCTCCWGGGGAGTCCTCGACGATAA
CGTCGACGAGCTTCTGCAATTCCCAGCGGACTCGGGTTTTCAGCGACGAT
TCCGAATACGATCTCAGGGCTATTCCTGGCGTGGCGGCGTACCCGCCGGC
ACATTCGTCGTCGGAGACCGAGAGTACGAGAAAGCGATTGAAGASCTCAA
TTGGGTYTAATTCCGGCGGGATTGAAGTCTCCGGCGCTGTATCCGACCCG
ATTCGGCCTCTGGTCCTGGTCGACTCACAAGAAACCGGTGTCCAACTCGT
CCACACACTCATGGCCTGTGCTGAGGCTGTCCAGCAGGAAAACTTGAAGC
TTGCAGACGCGCTTGTGAAGCACGTGGGCCTACTCGCGGCTGCCCAAACC
GGAKCTATGAGGAAAGTCGCCACGTACTTCGCTGAAGCTCTGGCTCGTCG
GATTTACCGAATATACCCTCAGGATTGCCTCGATTCTTCCTACTCGGACA
TTCTCCAGATGCACTTCTACGAGACCTGCCCYTACCTGAAATTTGCTCAC
TTCACTGCCAACCAGGCAATACTCGAGGCTTTTGCCACGGCGACCAGAGT
ACACGTCATCGATTTCGGGCTTAAACAGGGGATGCAATGGCCAGCGCTCA
TGCAGGCGCTGGCACTAAGGCCCGGTGGCCCACCCGTGTTTCGCCTGACG
GGTATTGGGCCGCCGCAGCCCGATAACACCGACGTTCTGCAGCAGGTGGG
ATGGAAGTTGGCTCAATTGGCAGAAACTATTGGGGTCGAGTTTGAATTTC
GAGGATTCGTGGCCAATAGCCTGGCTGACCTCGAGCCGTCTATGCTTGAC
ATCCGTCAGGACGAGGCCSTAGCGGTGAATTCGGTTTTCAAGCTTCACGG
TCTCTTGGCTCGAGCCGGGGCGGTGGACAAAGTGTTGTCATCAATCAAGG
CCATGAAGCCTAAAATTRTGACTATTGTGGAGCAGGAGGCGAACCATAAC
GGGCCGGTTTTCTTGGACCGGTTCACGGAGGCATTGCATTATTATTCAAG
CTTGTTTGACTCTCTGGAGGGATCGTCCGGGCCGAGTCAAGATTTGGTCA
TGTCCGAGGTCTATTTGGGTAGGCAGATATGCAACGTGGTGGCATGTGAA
GGTGGGGACCGAGTTGAGCGACACGAGACGCTGACTCAGTGGCGAGGCCG
GATGGACTCCGCCGGGTTCGACCCAGTCCACCTCGGATCGAACGCGTTCA
AGCAGGCTAGCATGCTGCTTGATCTTTTCGCCGGCGTAGATGGGTATCGG
GTGCAGGAGAACAATGGGTCTCTCATGCTCGGGTGGCACACGCGGCCGCT
CATAGTCACCTCGGCTTGGAAGCTGGCGAGCTCAACGGAGTGAGTGAATG
AGTCARTTTCAGTCGGTTCAGCGGCGGTGATTGATTGAACCACCGGGCAC
CCAGTGGGGTGGTTGGACACTGTGACCATGTGAGTTGTGAATTGTCAGTA
GAKAGAGTGGGGACTACAATGAAAGTGAAACTGTGAAACCAATCCAATCG
AATCAATCAAGTGGTGTAAACTGTGTAGTTGTAATTGTAATGGTAGTTTT
TWATTTTTKTTTTCATTTTTTTTATGGGCCCTTTTGCATAAGTTCCAAGT
TGTAGAGTCCTTTCGACAAGGGGGACGAATGAATCATTGTGAYGATGTGT
AACTATCTATCTTTTCTGGAATAAAATGATGAGCATTGATTCTTGAATGR
GAAAGAAACCATTTTGCTCTCTGTAAATTTGACACATTATCGTTATCCGG
ACGCTATAGGAGAAGGACTTGGATGGACCTWGAAARCGGAATGCTACCAC
TTTGGCGTCCTTGYWCAATAMATTGWCATGKACGGWGAGATTAGCAGTAA
CATTGTAYTRTYGACTTGTTCAATACATTRTCATGTACGGTGAGATTAGC
AGTAACATTGTATTATTGAATTGAYCGAGATTCCAGTGTGACGGTGTAAC
CATAGGGTAGGGTTGACTTAGGTGGTGATGAAGATGAAGATGAAGATGAA
GATGATGTTGATGATTCTAAATATAGAAACATGGCCTGCATATGCTATGT
CACCATCTGA

protein sequence of MDP0000181482

>MDP0000181482 ID=MDP0000181482; Name=MDP0000181482; organism=Malus x domestica; type=polypeptide; length=645bp
MKREHCHSSATASQNNSKXEYSSXPSSALNGKAKIWEDEQGYSGGGDMDE
LLAVLGYKVRTDDMADVAEKLEQLEMVMGSAQEDGVSQLSDTVHYNPSDL
SGWVQSMLSELNTGDDMPSINGPLLAPGESSTITSTSFCNSQRTRVFSDD
SEYDLRAIPGVAAYPPAHSSSETESTRKRLKXSIGXNSGGIEVSGAVSDP
IRPLVLVDSQETGVQLVHTLMACAEAVQQENLKLADALVKHVGLLAAAQT
GXMRKVATYFAEALARRIYRIYPQDCLDSSYSDILQMHFYETCPYLKFAH
FTANQAILEAFATATRVHVIDFGLKQGMQWPALMQALALRPGGPPVFRLT
GIGPPQPDNTDVLQQVGWKLAQLAETIGVEFEFRGFVANSLADLEPSMLD
IRQDEAXAVNSVFKLHGLLARAGAVDKVLSSIKAMKPKIXTIVEQEANHN
GPVFLDRFTEALHYYSSLFDSLEGSSGPSQDLVMSEVYLGRQICNVVACE
GGDRVERHETLTQWRGRMDSAGFDPVHLGSNAFKQASMLLDLFAGVDGYR
VQENNGSLMLGWHTRPLIVTSAWKLASSTDRXSGDYNESETVKPIQSNQS
SGVNCVVVIVMGRVDLGGDEDEDEDEDDVDDSKYRNMACICYVTI

mRNA from alignment at chr9:29373931..29376390+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000181482 ID=MDP0000181482; Name=MDP0000181482; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:29373931..29376390+ (Malus x domestica

mRNA from alignment at MDC006390.451:20117..22576+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000181482 ID=MDP0000181482; Name=MDP0000181482; organism=Malus x domestica; type=mRNA; length=2460bp; location=Sequence derived from: MDC006390.451:20117..22576+ (Malus x domestica
ATGAAGAGAGAACACTGCCATAGCTCTGCAACTGCAAGTCAGAATAATTC
CAAACSAGAATACTCATCACYGCCGTCTTCCGCCCTGAACGGCAAGGCCA
AGATTTGGGAAGATGAACAAGGCTACAGCGGCGGCGGCGACATGGACGAG
CTGCTTGCCGTTTTGGGATACAAGGTTCGGACCGACGACATGGCCGACGT
GGCCGAGAAGCTCGAGCAGCTCGAGATGGTCATGGGGTCGGCTCAGGAAG
ATGGGGTTTCTCAGCTCTCTGACACCGTCCATTACAACCCGTCCGATCTC
TCCGGGTGGGTCCAAAGCATGCTCTCTGAGCTCAACACCGGCGACGATAT
GCCCTCAATCAACGGCCCTCTTCTCGCTCCWGGGGAGTCCTCGACGATAA
CGTCGACGAGCTTCTGCAATTCCCAGCGGACTCGGGTTTTCAGCGACGAT
TCCGAATACGATCTCAGGGCTATTCCTGGCGTGGCGGCGTACCCGCCGGC
ACATTCGTCGTCGGAGACCGAGAGTACGAGAAAGCGATTGAAGASCTCAA
TTGGGTYTAATTCCGGCGGGATTGAAGTCTCCGGCGCTGTATCCGACCCG
ATTCGGCCTCTGGTCCTGGTCGACTCACAAGAAACCGGTGTCCAACTCGT
CCACACACTCATGGCCTGTGCTGAGGCTGTCCAGCAGGAAAACTTGAAGC
TTGCAGACGCGCTTGTGAAGCACGTGGGCCTACTCGCGGCTGCCCAAACC
GGAKCTATGAGGAAAGTCGCCACGTACTTCGCTGAAGCTCTGGCTCGTCG
GATTTACCGAATATACCCTCAGGATTGCCTCGATTCTTCCTACTCGGACA
TTCTCCAGATGCACTTCTACGAGACCTGCCCYTACCTGAAATTTGCTCAC
TTCACTGCCAACCAGGCAATACTCGAGGCTTTTGCCACGGCGACCAGAGT
ACACGTCATCGATTTCGGGCTTAAACAGGGGATGCAATGGCCAGCGCTCA
TGCAGGCGCTGGCACTAAGGCCCGGTGGCCCACCCGTGTTTCGCCTGACG
GGTATTGGGCCGCCGCAGCCCGATAACACCGACGTTCTGCAGCAGGTGGG
ATGGAAGTTGGCTCAATTGGCAGAAACTATTGGGGTCGAGTTTGAATTTC
GAGGATTCGTGGCCAATAGCCTGGCTGACCTCGAGCCGTCTATGCTTGAC
ATCCGTCAGGACGAGGCCSTAGCGGTGAATTCGGTTTTCAAGCTTCACGG
TCTCTTGGCTCGAGCCGGGGCGGTGGACAAAGTGTTGTCATCAATCAAGG
CCATGAAGCCTAAAATTRTGACTATTGTGGAGCAGGAGGCGAACCATAAC
GGGCCGGTTTTCTTGGACCGGTTCACGGAGGCATTGCATTATTATTCAAG
CTTGTTTGACTCTCTGGAGGGATCGTCCGGGCCGAGTCAAGATTTGGTCA
TGTCCGAGGTCTATTTGGGTAGGCAGATATGCAACGTGGTGGCATGTGAA
GGTGGGGACCGAGTTGAGCGACACGAGACGCTGACTCAGTGGCGAGGCCG
GATGGACTCCGCCGGGTTCGACCCAGTCCACCTCGGATCGAACGCGTTCA
AGCAGGCTAGCATGCTGCTTGATCTTTTCGCCGGCGTAGATGGGTATCGG
GTGCAGGAGAACAATGGGTCTCTCATGCTCGGGTGGCACACGCGGCCGCT
CATAGTCACCTCGGCTTGGAAGCTGGCGAGCTCAACGGAGTGAGTGAATG
AGTCARTTTCAGTCGGTTCAGCGGCGGTGATTGATTGAACCACCGGGCAC
CCAGTGGGGTGGTTGGACACTGTGACCATGTGAGTTGTGAATTGTCAGTA
GAKAGAGTGGGGACTACAATGAAAGTGAAACTGTGAAACCAATCCAATCG
AATCAATCAAGTGGTGTAAACTGTGTAGTTGTAATTGTAATGGTAGTTTT
TWATTTTTKTTTTCATTTTTTTTATGGGCCCTTTTGCATAAGTTCCAAGT
TGTAGAGTCCTTTCGACAAGGGGGACGAATGAATCATTGTGAYGATGTGT
AACTATCTATCTTTTCTGGAATAAAATGATGAGCATTGATTCTTGAATGR
GAAAGAAACCATTTTGCTCTCTGTAAATTTGACACATTATCGTTATCCGG
ACGCTATAGGAGAAGGACTTGGATGGACCTWGAAARCGGAATGCTACCAC
TTTGGCGTCCTTGYWCAATAMATTGWCATGKACGGWGAGATTAGCAGTAA
CATTGTAYTRTYGACTTGTTCAATACATTRTCATGTACGGTGAGATTAGC
AGTAACATTGTATTATTGAATTGAYCGAGATTCCAGTGTGACGGTGTAAC
CATAGGGTAGGGTTGACTTAGGTGGTGATGAAGATGAAGATGAAGATGAA
GATGATGTTGATGATTCTAAATATAGAAACATGGCCTGCATATGCTATGT
CACCATCTGA

Coding sequence (CDS) from alignment at MDC006390.451:20117..22576+

>MDP0000181482 ID=MDP0000181482; Name=MDP0000181482; organism=Malus x domestica; type=CDS; length=1938bp; location=Sequence derived from: MDC006390.451:20117..22576+ (Malus x domestica
ATGAAGAGAGAACACTGCCATAGCTCTGCAACTGCAAGTCAGAATAATTC
CAAACSAGAATACTCATCACYGCCGTCTTCCGCCCTGAACGGCAAGGCCA
AGATTTGGGAAGATGAACAAGGCTACAGCGGCGGCGGCGACATGGACGAG
CTGCTTGCCGTTTTGGGATACAAGGTTCGGACCGACGACATGGCCGACGT
GGCCGAGAAGCTCGAGCAGCTCGAGATGGTCATGGGGTCGGCTCAGGAAG
ATGGGGTTTCTCAGCTCTCTGACACCGTCCATTACAACCCGTCCGATCTC
TCCGGGTGGGTCCAAAGCATGCTCTCTGAGCTCAACACCGGCGACGATAT
GCCCTCAATCAACGGCCCTCTTCTCGCTCCWGGGGAGTCCTCGACGATAA
CGTCGACGAGCTTCTGCAATTCCCAGCGGACTCGGGTTTTCAGCGACGAT
TCCGAATACGATCTCAGGGCTATTCCTGGCGTGGCGGCGTACCCGCCGGC
ACATTCGTCGTCGGAGACCGAGAGTACGAGAAAGCGATTGAAGASCTCAA
TTGGGTYTAATTCCGGCGGGATTGAAGTCTCCGGCGCTGTATCCGACCCG
ATTCGGCCTCTGGTCCTGGTCGACTCACAAGAAACCGGTGTCCAACTCGT
CCACACACTCATGGCCTGTGCTGAGGCTGTCCAGCAGGAAAACTTGAAGC
TTGCAGACGCGCTTGTGAAGCACGTGGGCCTACTCGCGGCTGCCCAAACC
GGAKCTATGAGGAAAGTCGCCACGTACTTCGCTGAAGCTCTGGCTCGTCG
GATTTACCGAATATACCCTCAGGATTGCCTCGATTCTTCCTACTCGGACA
TTCTCCAGATGCACTTCTACGAGACCTGCCCYTACCTGAAATTTGCTCAC
TTCACTGCCAACCAGGCAATACTCGAGGCTTTTGCCACGGCGACCAGAGT
ACACGTCATCGATTTCGGGCTTAAACAGGGGATGCAATGGCCAGCGCTCA
TGCAGGCGCTGGCACTAAGGCCCGGTGGCCCACCCGTGTTTCGCCTGACG
GGTATTGGGCCGCCGCAGCCCGATAACACCGACGTTCTGCAGCAGGTGGG
ATGGAAGTTGGCTCAATTGGCAGAAACTATTGGGGTCGAGTTTGAATTTC
GAGGATTCGTGGCCAATAGCCTGGCTGACCTCGAGCCGTCTATGCTTGAC
ATCCGTCAGGACGAGGCCSTAGCGGTGAATTCGGTTTTCAAGCTTCACGG
TCTCTTGGCTCGAGCCGGGGCGGTGGACAAAGTGTTGTCATCAATCAAGG
CCATGAAGCCTAAAATTRTGACTATTGTGGAGCAGGAGGCGAACCATAAC
GGGCCGGTTTTCTTGGACCGGTTCACGGAGGCATTGCATTATTATTCAAG
CTTGTTTGACTCTCTGGAGGGATCGTCCGGGCCGAGTCAAGATTTGGTCA
TGTCCGAGGTCTATTTGGGTAGGCAGATATGCAACGTGGTGGCATGTGAA
GGTGGGGACCGAGTTGAGCGACACGAGACGCTGACTCAGTGGCGAGGCCG
GATGGACTCCGCCGGGTTCGACCCAGTCCACCTCGGATCGAACGCGTTCA
AGCAGGCTAGCATGCTGCTTGATCTTTTCGCCGGCGTAGATGGGTATCGG
GTGCAGGAGAACAATGGGTCTCTCATGCTCGGGTGGCACACGCGGCCGCT
CATAGTCACCTCGGCTTGGAAGCTGGCGAGCTCAACGGATAGAKAGAGTG
GGGACTACAATGAAAGTGAAACTGTGAAACCAATCCAATCGAATCAATCA
AGTGGTGTAAACTGTGTAGTTGTAATTGTAATGGGTAGGGTTGACTTAGG
TGGTGATGAAGATGAAGATGAAGATGAAGATGATGTTGATGATTCTAAAT
ATAGAAACATGGCCTGCATATGCTATGTCACCATCTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005202	TF_GRAS
IPR021914	TF_DELLA_N