MDP0000152670, MDP0000152670 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000152670
Unique NameMDP0000152670
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1656
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000152670_exon_1MDP0000152670_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000152670MDP0000152670Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005202Transcription factor GRASPFAMPF03514GRAScoord: 175..545
score:
IPR005202Transcription factor GRASPROFILEPS50985GRAScoord: 149..526
score:

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000152670 ID=MDP0000152670; Name=MDP0000152670; organism=Malus x domestica; type=mRNA; length=1656bp
ATGCAAGCATCGAAGCAGCAGAGAAGTTCAGGGATGTCAAACCGGTTGCA
TTATCAGCCAATCCAAGAAGTAGAAGCCTACTGCTTGCCTCGGTTCCAAA
CTTTGGACCCCCAGCTACATTACAACGAGAGCAGCCAAAGTACCCACCTC
CCAATGCAGAGTTTCCACTACTGCACTTTGGAGTCTTCCTGGTCTAATGG
TAGCTACACCATTTATAACTCCCCATCAAATGTCAGCTTCTCACCTAGTG
GAAGCCCGATGTCACAGCAAGACTCTCATTCATATCCGTCTGAGCGGTAT
CATTCCCCTGACCAGACCTACAGCTCTCCGATAAGCGGATCCTGCATAAC
TGATGATGCACCTGACTTCAAGTACAAGCTGAAACAATTAGAAACTGTAA
TGCTGGGTCCTGATTCCAACATTCTTGATAACTATTGCATTAATTTCCCG
AATGGAGCGAGCAATACCCTGCCAGACACAGACAGCTTGGGACAGATTAT
GGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCTTCGCAA
AAGCAGTAGCTGATAATGATCTGTTAATGGCACAATGGATGAAGGATGAG
TTACGCCAGATGGTATCGGTTTCAGGTGAACCGATTCAGAGGTTGGGGGC
ATACTTGCTGGAAGGACTAGTTGCACGGAAGGCATCCTCGGGGAGTAACA
TTTACAAAGCACTGAGATGCAAAGAACCAGCGAGGTCCGAACTCCTCTCT
TACATGCACATTCTTTATGAGGTTTGTCCCTACTTCAAGTTTGGGTACAT
GTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGACGAGAACCGAGTTC
ACATCATTGATTTCCAAATCGGTCAGGGGAGTCAGTGGATCACTCTAATC
CAGGCTTTTGCATCCAGACCTGGTGGACCACCCCATATMCGTATAACAGG
TATTGACGACTCCATGTCAGCTTATGCCCGTGGGGGAGGACTAAATATTG
TGGGAAAGGCGCTGTCTAAACTTGCTGAGTCGTTTAAGGTGCCGTTTGAG
TTTCATGCTGCAGCCATGTCTGGCTGCGACGTTCAGCTGGGGCATCTTGG
TGTTCGACCTGGGGAGGCTTTGGCTGTGAACTTTGCTTTCATGCTGCACC
ACATGCCAGATGAGAGTGTCAGCACTCAGAACCATCGGGATAGGCTGTTG
AGGTTGGTTAAGAGCTTGTCTCCGAAAGTGGTGACCCTCGTTGAGCAAGA
ATCTAACACAAACACTGCTGCATTTTATCCACGCTTTGTAGAAACACTAA
ATTACTACACAGCTATGTTTGAGTCAATTGATGTTACTCTTCCGAGGGAT
CACAAGGAGCGGATCAATGTGGAGCAACACTGCTTGGCTAGGGAGGTTGT
TAACATAATAGCATGTGAGGGCATTGAAAGGGTGGAAAGACACGAACTTC
TTGGGAAATGGAGGTTGCGCTTCGCAATGGCTGGATTTACACCATACCCT
CTMAGCTCATTGGTAAATGCCACCATCAAGACGCTGCTAGAGAACTACTC
TGACAAATATCGACTTGAAGAGCGGGATGGAGCACTCTATCTTGGCTGGA
AGAACAGAGATTTGGTTGCTTCTTGTGCATGGAGGTGCAAACCGAGCACG
AATTGA
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protein sequence of MDP0000152670

>MDP0000152670 ID=MDP0000152670; Name=MDP0000152670; organism=Malus x domestica; type=polypeptide; length=551bp
MQASKQQRSSGMSNRLHYQPIQEVEAYCLPRFQTLDPQLHYNESSQSTHL
PMQSFHYCTLESSWSNGSYTIYNSPSNVSFSPSGSPMSQQDSHSYPSERY
HSPDQTYSSPISGSCITDDAPDFKYKLKQLETVMLGPDSNILDNYCINFP
NGASNTLPDTDSLGQIMESISKKDLKQVLIFFAKAVADNDLLMAQWMKDE
LRQMVSVSGEPIQRLGAYLLEGLVARKASSGSNIYKALRCKEPARSELLS
YMHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWITLI
QAFASRPGGPPHIRITGIDDSMSAYARGGGLNIVGKALSKLAESFKVPFE
FHAAAMSGCDVQLGHLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLL
RLVKSLSPKVVTLVEQESNTNTAAFYPRFVETLNYYTAMFESIDVTLPRD
HKERINVEQHCLAREVVNIIACEGIERVERHELLGKWRLRFAMAGFTPYP
LSSLVNATIKTLLENYSDKYRLEERDGALYLGWKNRDLVASCAWRCKPST
N
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mRNA from alignment at chr17:9016383..9018038-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000152670 ID=MDP0000152670; Name=MDP0000152670; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr17:9016383..9018038- (Malus x domestica
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mRNA from alignment at MDC017641.109:3790..5445-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000152670 ID=MDP0000152670; Name=MDP0000152670; organism=Malus x domestica; type=mRNA; length=1656bp; location=Sequence derived from: MDC017641.109:3790..5445- (Malus x domestica
ATGCAAGCATCGAAGCAGCAGAGAAGTTCAGGGATGTCAAACCGGTTGCA
TTATCAGCCAATCCAAGAAGTAGAAGCCTACTGCTTGCCTCGGTTCCAAA
CTTTGGACCCCCAGCTACATTACAACGAGAGCAGCCAAAGTACCCACCTC
CCAATGCAGAGTTTCCACTACTGCACTTTGGAGTCTTCCTGGTCTAATGG
TAGCTACACCATTTATAACTCCCCATCAAATGTCAGCTTCTCACCTAGTG
GAAGCCCGATGTCACAGCAAGACTCTCATTCATATCCGTCTGAGCGGTAT
CATTCCCCTGACCAGACCTACAGCTCTCCGATAAGCGGATCCTGCATAAC
TGATGATGCACCTGACTTCAAGTACAAGCTGAAACAATTAGAAACTGTAA
TGCTGGGTCCTGATTCCAACATTCTTGATAACTATTGCATTAATTTCCCG
AATGGAGCGAGCAATACCCTGCCAGACACAGACAGCTTGGGACAGATTAT
GGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCTTCGCAA
AAGCAGTAGCTGATAATGATCTGTTAATGGCACAATGGATGAAGGATGAG
TTACGCCAGATGGTATCGGTTTCAGGTGAACCGATTCAGAGGTTGGGGGC
ATACTTGCTGGAAGGACTAGTTGCACGGAAGGCATCCTCGGGGAGTAACA
TTTACAAAGCACTGAGATGCAAAGAACCAGCGAGGTCCGAACTCCTCTCT
TACATGCACATTCTTTATGAGGTTTGTCCCTACTTCAAGTTTGGGTACAT
GTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGACGAGAACCGAGTTC
ACATCATTGATTTCCAAATCGGTCAGGGGAGTCAGTGGATCACTCTAATC
CAGGCTTTTGCATCCAGACCTGGTGGACCACCCCATATMCGTATAACAGG
TATTGACGACTCCATGTCAGCTTATGCCCGTGGGGGAGGACTAAATATTG
TGGGAAAGGCGCTGTCTAAACTTGCTGAGTCGTTTAAGGTGCCGTTTGAG
TTTCATGCTGCAGCCATGTCTGGCTGCGACGTTCAGCTGGGGCATCTTGG
TGTTCGACCTGGGGAGGCTTTGGCTGTGAACTTTGCTTTCATGCTGCACC
ACATGCCAGATGAGAGTGTCAGCACTCAGAACCATCGGGATAGGCTGTTG
AGGTTGGTTAAGAGCTTGTCTCCGAAAGTGGTGACCCTCGTTGAGCAAGA
ATCTAACACAAACACTGCTGCATTTTATCCACGCTTTGTAGAAACACTAA
ATTACTACACAGCTATGTTTGAGTCAATTGATGTTACTCTTCCGAGGGAT
CACAAGGAGCGGATCAATGTGGAGCAACACTGCTTGGCTAGGGAGGTTGT
TAACATAATAGCATGTGAGGGCATTGAAAGGGTGGAAAGACACGAACTTC
TTGGGAAATGGAGGTTGCGCTTCGCAATGGCTGGATTTACACCATACCCT
CTMAGCTCATTGGTAAATGCCACCATCAAGACGCTGCTAGAGAACTACTC
TGACAAATATCGACTTGAAGAGCGGGATGGAGCACTCTATCTTGGCTGGA
AGAACAGAGATTTGGTTGCTTCTTGTGCATGGAGGTGCAAACCGAGCACG
AATTGA
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Coding sequence (CDS) from alignment at MDC017641.109:3790..5445-

>MDP0000152670 ID=MDP0000152670; Name=MDP0000152670; organism=Malus x domestica; type=CDS; length=1656bp; location=Sequence derived from: MDC017641.109:3790..5445- (Malus x domestica
ATGCAAGCATCGAAGCAGCAGAGAAGTTCAGGGATGTCAAACCGGTTGCA
TTATCAGCCAATCCAAGAAGTAGAAGCCTACTGCTTGCCTCGGTTCCAAA
CTTTGGACCCCCAGCTACATTACAACGAGAGCAGCCAAAGTACCCACCTC
CCAATGCAGAGTTTCCACTACTGCACTTTGGAGTCTTCCTGGTCTAATGG
TAGCTACACCATTTATAACTCCCCATCAAATGTCAGCTTCTCACCTAGTG
GAAGCCCGATGTCACAGCAAGACTCTCATTCATATCCGTCTGAGCGGTAT
CATTCCCCTGACCAGACCTACAGCTCTCCGATAAGCGGATCCTGCATAAC
TGATGATGCACCTGACTTCAAGTACAAGCTGAAACAATTAGAAACTGTAA
TGCTGGGTCCTGATTCCAACATTCTTGATAACTATTGCATTAATTTCCCG
AATGGAGCGAGCAATACCCTGCCAGACACAGACAGCTTGGGACAGATTAT
GGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCTTCGCAA
AAGCAGTAGCTGATAATGATCTGTTAATGGCACAATGGATGAAGGATGAG
TTACGCCAGATGGTATCGGTTTCAGGTGAACCGATTCAGAGGTTGGGGGC
ATACTTGCTGGAAGGACTAGTTGCACGGAAGGCATCCTCGGGGAGTAACA
TTTACAAAGCACTGAGATGCAAAGAACCAGCGAGGTCCGAACTCCTCTCT
TACATGCACATTCTTTATGAGGTTTGTCCCTACTTCAAGTTTGGGTACAT
GTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGACGAGAACCGAGTTC
ACATCATTGATTTCCAAATCGGTCAGGGGAGTCAGTGGATCACTCTAATC
CAGGCTTTTGCATCCAGACCTGGTGGACCACCCCATATMCGTATAACAGG
TATTGACGACTCCATGTCAGCTTATGCCCGTGGGGGAGGACTAAATATTG
TGGGAAAGGCGCTGTCTAAACTTGCTGAGTCGTTTAAGGTGCCGTTTGAG
TTTCATGCTGCAGCCATGTCTGGCTGCGACGTTCAGCTGGGGCATCTTGG
TGTTCGACCTGGGGAGGCTTTGGCTGTGAACTTTGCTTTCATGCTGCACC
ACATGCCAGATGAGAGTGTCAGCACTCAGAACCATCGGGATAGGCTGTTG
AGGTTGGTTAAGAGCTTGTCTCCGAAAGTGGTGACCCTCGTTGAGCAAGA
ATCTAACACAAACACTGCTGCATTTTATCCACGCTTTGTAGAAACACTAA
ATTACTACACAGCTATGTTTGAGTCAATTGATGTTACTCTTCCGAGGGAT
CACAAGGAGCGGATCAATGTGGAGCAACACTGCTTGGCTAGGGAGGTTGT
TAACATAATAGCATGTGAGGGCATTGAAAGGGTGGAAAGACACGAACTTC
TTGGGAAATGGAGGTTGCGCTTCGCAATGGCTGGATTTACACCATACCCT
CTMAGCTCATTGGTAAATGCCACCATCAAGACGCTGCTAGAGAACTACTC
TGACAAATATCGACTTGAAGAGCGGGATGGAGCACTCTATCTTGGCTGGA
AGAACAGAGATTTGGTTGCTTCTTGTGCATGGAGGTGCAAACCGAGCACG
AATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005202TF_GRAS